| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2472140 | 57 (0.860) | 7 (0.150) | 5/206 | 6.7 | 13.8% | intergenic (+44/+105) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | = 2472186 | 46 (0.960) | intergenic (+90/+59) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCA > NC_002947/2471994‑2472287 | ggtgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacac > 5:145159/1‑147 (MQ=255) gtgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacgac < 4:127096/149‑1 (MQ=255) gtgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacgac < 2:324208/149‑1 (MQ=255) cgcTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGTAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGc < 6:91834/149‑1 (MQ=255) cTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCt > 8:122753/1‑149 (MQ=255) cAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg > 4:307989/1‑149 (MQ=255) cAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg > 4:177060/1‑149 (MQ=255) cAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg < 5:290056/149‑1 (MQ=255) aaGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcgc < 3:37203/149‑1 (MQ=255) aaGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcgc < 3:307989/149‑1 (MQ=255) aaGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcgc < 4:8819/149‑1 (MQ=255) aGGTGCTGGTGGCGCACAAGATCCTCATGGGCCTGTATGACTCCAACCGGGAAGCCTTCCATGATCTGGTCAATGCGGTGGAGGGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGCCTGCGcc < 2:166896/149‑1 (MQ=38) ggTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc < 4:95403/149‑1 (MQ=255) gAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAaca < 5:380743/147‑1 (MQ=255) ggCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCaa < 8:162401/149‑1 (MQ=255) gcgcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGGGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAt < 5:108333/149‑1 (MQ=255) gcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt < 4:115850/149‑1 (MQ=255) gcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTAGCGGGTAAACCCGCTCCTACGACCGCCTGCGCCCAAACACCaaatt > 3:108120/1‑146 (MQ=255) acaAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGGCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtg‑t < 3:177060/149‑1 (MQ=255) acaAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGT‑AACCCCCGCCTAACACCGCCGGCGCCCCAACACCAAtgtg‑tg > 4:198506/1‑149 (MQ=255) gATCCTCATGGGCCTGAATGACGACAACCGCGAAGCCTTCCATGATCTGGTAAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCAATTAGCGGGTAAAACCCCGCCGACGACGGGAGGGGCCCAGAAACCCAtgtggggcg > 7:59437/1‑144 (MQ=255) tCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCCACCACCCATGTG‑TGT‑GCAcccc > 7:292630/1‑149 (MQ=255) tCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCGACTACGACGGGCAGCGCCCAAACACCAATGTG‑TGT‑cgggccc > 5:113071/1‑143 (MQ=38) ccTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCCGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAg < 1:315808/149‑1 (MQ=255) cTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAgg < 2:372498/149‑1 (MQ=255) cTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCATCGCGGGTTAAACCCCTACTACGACGGCCTGCGCCAAAAAAACAATGTG‑TGTGCCACCCCaaaaagg > 2:4888/1‑145 (MQ=255) aaTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc > 1:352666/1‑115 (MQ=255) aaTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGccc < 2:352666/115‑1 (MQ=255) aCTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGa < 6:360731/149‑1 (MQ=255) cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGc < 1:46403/147‑1 (MQ=255) cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCgg < 2:9791/149‑1 (MQ=255) gcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAacac > 5:356425/1‑108 (MQ=255) gcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAacac < 6:356425/108‑1 (MQ=255) gAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCGACGACGGCCTGCGCCCCAACACCAAATTG‑GTT‑CCACCCCCAATAAGGTGTAGGATCGGGTTTAcc > 5:314585/1‑149 (MQ=38) caaGCCTTCCATGATCTGTTCAATGCGCTGGAGCGACGCTCACCTATCGCCTGTGCCGGCCTCTCCGCGGGT‑AACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTAccc < 3:198506/148‑1 (MQ=21) gCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCGCATCGCGGGTAAAACCCCGCCTACGCCGGGCAGCGGCCAAACAACAAAGTG‑TGG‑ACACCCCCAATCAAGGGGACGAGCGGGGTTaaacgc > 2:112493/1‑144 (MQ=255) aTGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGAAGGAGCGGGTTTACCCGCGAAGAgg < 7:122753/149‑1 (MQ=255) aTCTGGTCAATGCGCTTGAGGGGAGGGGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGcc < 6:314585/148‑1 (MQ=25) cTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCgg < 8:353647/127‑1 (MQ=255) cTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCgg > 7:353647/1‑127 (MQ=255) cgcTGTAGCGGAGATGATATTTTGCCTGTGCCGGCCTCTTCGCGGTTAAACCCGCTCAAACCACGGCCTGCGCCCAAACACAATTGTG‑TGT‑CCCCCCCAAATCCGGTTTAGGAGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCTGt < 6:113071/148‑1 (MQ=255) gaggATCTATCCCGTGTGCGGCCCGCTGCGCGGGAAAACCCGCCCCTACCCCGGCCTGCCCCCAACCACCATTGTG‑TTG‑CCACCCCCAATCTGGTTTAGGAGGGGGTTTACCCGCTAAGAGGCCGGCACAGGCTGTAAAAACTCTGAAt < 8:261932/146‑1 (MQ=255) ccGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAgg > 7:296210/1‑76 (MQ=255) ccGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAgg < 8:296210/76‑1 (MQ=255) ccGGCCTCTGCGGGGCAAAACCCGCCCCTCCGACGGCCGGCGCCCAAAACCCATTGTG‑TGC‑CCCCCCCCAATCAGGTGTCGGCGCGGTTTAACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGtttt < 7:91803/149‑1 (MQ=255) cGGCCTCTTCGCGGGTAAAACCCCGACAACGCCGGCCTGCGCCCCAACACCAAAATGTTGA‑CCCCCCCCAA‑AAGGAGTAAGAGCCGGTTATACCGCCAAAAGGCCGGCCCACGCTGTAAAAAAACTGAAAATGACTAAGACCGGttttt > 4:80555/1‑149 (MQ=255) ggCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCCCCCCCAATCAGGTGTAGGAGCGGGTTTAACCGCGAAGCGGCCGGCACAGGCTGTTAAAACTAGGAATCTCACTAAGCCCGGgtttt > 6:309384/1‑148 (MQ=21) gCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑ACACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAAATCTGAATGTCACAAGGCCCGGTTTTTa > 6:81461/1‑148 (MQ=25) ttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATAAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGGTTTTAAActct > 1:114771/1‑149 (MQ=255) cgGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGt > 8:274526/1‑106 (MQ=255) ggTAAACCCGCGCCTACGACGGCCTGCGCCCAAACCCCAATGTG‑TGT‑CAACCCCCAATCAGGGGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGcc < 2:114771/149‑1 (MQ=37) aCCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCa < 7:282718/116‑1 (MQ=255) aCCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCa > 8:282718/1‑116 (MQ=255) cccGCTCCTACTACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGAAGGAGCGGGTTTACCCGCTAAGAGACCCGAACAGGCTGTAAAATCTCTGAATCTCACTACGCCCGTGTTTTAAACGATGTAGCCTCAccc > 6:338622/1‑149 (MQ=255) gccccTACGACGGCCTGCCCCCAAACACCATTGTC‑GGT‑CCCCCCCCAATCCGGTGTACCCGCGCTTTAACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg < 3:284373/146‑1 (MQ=255) gCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg > 1:80/1‑149 (MQ=255) cTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCACCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTCAGCCCGGTTTTTAAACTATGTAGCCTCACCCCCGCCAg > 8:334528/1‑149 (MQ=255) acgacgGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCa > 8:134364/1‑149 (MQ=255) | GGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTG‑TGT‑CCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCA > NC_002947/2471994‑2472287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |