New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	336206 =	35 (0.530)	9 (0.170)	8/230	5.9	22.4%	intergenic (+54/+339)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
	?	NC_002947	336326 =	34 (0.630)					intergenic (+174/+219)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

GAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCGC  >  NC_002947/336213‑336473                                                                                                                  |                                                                                                                                                    gAGCGGCCTTGCGTCGCGACTGGGCTGCAAAGCAGCCCCGGGGGGTTGCGAGCTTGCGCGGAAAACGGGGGGCGCTTTGCGGGCCGGTGGCGCCGCAAGGCCGCGCCCACCAAAGCCCGGTGGGGGAACCCCAAGCAATGTTTATGcac                                                                                                                  >  4:243168/1‑149 (MQ=255)  aGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGcac                                                                                                                  >  1:96646/1‑148 (MQ=255)  aGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGcac                                                                                                                  >  3:323208/1‑148 (MQ=255)      gCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACATGAAATGTTTATGCACAAGTg                                                                                                             >  5:223658/1‑149 (MQ=255)       ccTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTgg                                                                                                            >  5:242985/1‑149 (MQ=255)           gCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCAtt                                                                                                        >  3:310980/1‑149 (MQ=255)              tCGCGACTGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTgg                                                                                                     >  5:35200/1‑149 (MQ=255)               cgcgAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTgg                                                                                                     >  7:362029/1‑148 (MQ=255)                   aaTGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCt                                                                                                >  8:149006/1‑149 (MQ=255)                       ggCTGCAAAGCAGCCCCGGCTATTTCTCAGATTGCGCTTAAACCGGGGGCCGCTTTGCGGCCCTTTCGCTACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGc                                                                                            <  2:96646/149‑1 (MQ=39)                       ggCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACCGGGGACGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGc                                                                                            >  1:285261/1‑149 (MQ=255)                        gCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGc                                                                                            >  6:333199/1‑148 (MQ=255)                          tGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGa                                                                                          >  2:62530/1‑148 (MQ=255)                               agcagcCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCa                                                                                    >  6:340755/1‑149 (MQ=255)                                 cagcCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATg                                                                                  >  3:150830/1‑149 (MQ=255)                                  agcCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGc                                                                                 >  8:106326/1‑149 (MQ=255)                                    ccccGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTggg                                                                                                    >  8:351668/1‑128 (MQ=255)                                    ccccGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTggg                                                                                                    <  7:351668/128‑1 (MQ=255)                                        ggCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATc                                                                           <  1:62530/149‑1 (MQ=255)                                             tttCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTa                                                                       <  4:150830/148‑1 (MQ=255)                                              ttCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTAcg                                                                     >  3:95901/1‑149 (MQ=255)                                                    gaTTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTg                                                               <  4:310980/149‑1 (MQ=255)                                                            tGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTgc                                                       >  1:158939/1‑149 (MQ=255)                                                            tGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTgc                                                       >  5:221174/1‑149 (MQ=255)                                                                        ccGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGt                                           >  7:162076/1‑149 (MQ=255)                                                                         cGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGtt                                          >  4:357853/1‑149 (MQ=255)                                                                         cGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGACGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTggt                                          >  7:154768/1‑147 (MQ=255)                                                                           cTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACTAGTGGCATTTGGGACCTGAGCGAACGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGtttt                                        >  5:222461/1‑149 (MQ=255)                                                                           cTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGTTCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGtt                                          <  7:336685/147‑1 (MQ=255)                                                                               ggggCCCTTTCGCGACTAATGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACt                                    <  1:114405/147‑1 (MQ=255)                                                                               gCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTAc                                     <  2:285261/148‑1 (MQ=255)                                                                                cGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTg                                   <  5:340755/149‑1 (MQ=255)                                                                                cGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTg                                   >  3:135314/1‑149 (MQ=255)                                                                                  gCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTggg                                 <  6:221174/149‑1 (MQ=255)                                                                                     cTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGCGCtc                              >  4:328478/1‑148 (MQ=255)                                                                                               gCAAGTCCTCTCCCACAAAAGCCGCTTGCGCTAACCACAATAAATGTTTATGCACAAGTGTCATTTGGGACCTGAGCTATTTGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTg                                   <  5:306112/134‑1 (MQ=255)                                                                                               gCAAGGCCGCTCCCACAACAGCCGCTGGCGCTAACCACAACCAATGCTGATGCCCAAGTCGCATTTGGGACCTGAGCGAAAGGCCTGCCGGATCGCTACGCCGCTGGTCTTTGCGCACACGCCTGTTTTTACTGGTCTGCAGCCGCAAg                    <  8:154768/149‑1 (MQ=255)                                                                                               ccAAGGCAGCTCCCACAAAAGCCGCTTGAGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGTAACTGAGCCAAAGGCATGCCGGAACGCTACGCCTCTGGTCTTTGCGCAAACGCCTGTTATTACTg                                   >  6:306112/2‑134 (MQ=255)                                                                                                 aaGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGttttt                                       >  6:194583/1‑128 (MQ=255)                                                                                                 aaGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGttttt                                       <  5:194583/128‑1 (MQ=255)                                                                                                 aaGGACGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGACGCTGGTCTTTGCGAAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAg                    >  4:340372/1‑147 (MQ=255)                                                                                                     ccGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGa               >  7:88722/1‑148 (MQ=255)                                                                                                        cTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATaa           <  3:243168/149‑1 (MQ=255)                                                                                                           ccACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGc                                                                         >  7:187092/1‑84 (MQ=255)                                                                                                           ccACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGc                                                                         <  8:187092/84‑1 (MQ=255)                                                                                                           ccACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAg          <  7:149006/147‑1 (MQ=255)                                                                                                                 aaGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAgcgc  <  8:362029/149‑1 (MQ=255)                                                                                                                  |                                                                                                                                                    GAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCGC  >  NC_002947/336213‑336473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.