| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 4,740,811 | (T)7→6 | intergenic (+48/+705) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,740,805 | 0 | T | . | 90.5% | 144.5 / 11.8 | 42 | intergenic (+42/+711) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (0/4); new base . (20/18); total (20/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
AAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTG > NC_002947/4740669‑4740947 | aaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTTGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatttgtc < 1:307819/149‑8 (MQ=255) tGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCtt > 8:63718/1‑135 (MQ=255) tGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCtt < 7:63718/135‑1 (MQ=255) cAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGc > 5:263177/1‑149 (MQ=255) cAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCACAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTCTTTATTTGTCCTGTGCCGGc < 4:111140/149‑1 (MQ=255) aGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGc > 4:411417/1‑148 (MQ=255) cGTACAAGATCGGCCGTCCGCACCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 7:226696/126‑1 (MQ=255) cGTACAAGATCGGCCGTCCGCACCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt > 8:226696/1‑126 (MQ=255) gTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt > 7:275347/1‑125 (MQ=255) gTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 8:275347/125‑1 (MQ=255) gATCGGCCGTCCTCGCCAGCTGTACTCCGGCGAGCAGAAGCGCGACATCGTTGCGCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGcc < 3:38660/149‑1 (MQ=255) gATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat < 7:124958/122‑3 (MQ=255) gATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat > 8:124958/1‑120 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGACAGACCGCAAGTAAGCTGCAGTAGCCGACCGCAAGAAGGCTGCCCTCGGGCAGCC‑GTTTTTATTTGTCCTGGGCCGGCCTC‑TTCGCGGCCt > 3:342758/1‑149 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCt > 6:430180/1‑149 (MQ=255) tCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCtt < 5:124189/149‑1 (MQ=255) ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCAC‑TTCGCGGCCtgtc > 3:130348/1‑146 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAaga < 2:279996/149‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAagag > 4:246569/1‑149 (MQ=255) cAGCTGTACACCGGCGAGCAGTAGAGCGACATCGTTGCCCTGAAAGACCGAAAGTAAGCTGCAGTAGCCGAACGCAATAAGTCTGCCCTCGGGCAGCCTTTTTTT‑TTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCGCGCGAAGAGGc < 4:342758/149‑1 (MQ=255) acCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGa < 7:125568/149‑1 (MQ=255) gacgcgcGACCTCGTGGCCCTGAAACACCTCACTTACGCGGCATCAGCCTACCCCAACAGGGCTCCCCTC‑GGCATGCTTTTTTTATTTGCCCTGGGCCGGCCTC‑TTCGCGGCCTTGCCCGCTATGTGGCCGGCACAGACACCACAAAAc < 4:130348/146‑1 (MQ=255) gACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCACATACGCGCCATTCCCCGCAAAGAGCCCGG‑ACACGCCCCACAAAAccaaaatt > 2:361180/1‑143 (MQ=255) cGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGGCAAGGCCGCGAaga > 7:396546/1‑114 (MQ=37) cGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGGCAAGGCCGCGAaga < 8:396546/114‑1 (MQ=37) cGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAagag < 4:412773/115‑1 (MQ=255) cGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAagag > 3:412773/1‑115 (MQ=255) cGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑ATCGCGGCCTTGCCCGCGAAGACGCCGGCACAGACACCACAAAACCGCAGGTTTtc > 5:402927/1‑148 (MQ=255) gTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTACCGGCCTTTCCCGCGCAGAGGCCGGCACCGACCCCCCAAAACCGCAGGTTTtatc > 6:364524/1‑149 (MQ=255) ttGCCCTCAAAGACCGCAAGTAAGCTGCAGTCGCCCAACCCAACAAGGCTGCCCTCGGCCAGCC‑TTTTTTATTTGTCCTGGGCCGGCCTC‑TTCGCGGCCTTGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 4:374778/149‑1 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTACTccgcc > 7:373840/1‑147 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTACTccgcc < 8:373840/147‑1 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCAC‑TTAGCGGCCTTGCCCGCGCAGAGGCCGGCACAGCCACCACAAAACCACACTTTTTATacgcccg > 1:180492/1‑149 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGGCAAGGCCGCGAagag < 1:332831/107‑1 (MQ=25) gCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACCCCACAAAACCTCAGTTTTTCTACGCCCGCGAACGCAGc > 2:297777/1‑149 (MQ=255) cAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAaga > 1:383707/1‑96 (MQ=38) cAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAaga < 2:383707/96‑1 (MQ=38) gaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAagag > 7:14847/2‑96 (MQ=38) gaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAagag < 8:14847/95‑1 (MQ=38) aGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTc < 6:337899/148‑1 (MQ=255) cTGCCGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGa < 5:433174/100‑1 (MQ=37) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGa > 6:433174/1‑100 (MQ=38) tGCAGTAGCCGAACGCAAGAAGGCTGCCCTCTGGAAGCC‑TTTTTTATTTGTCCTGTTCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCATTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAggg < 5:430180/149‑1 (MQ=255) gCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGa < 3:246569/148‑1 (MQ=255) acgaagGCTCCCCTCGGGCAGCCTTTTTTT‑TTTGTCCTGTGCCGCCCTC‑TTCGCGGCCTTGCCCACGAAGAGGCCGGCACAGACACCACAAAACCTCAg < 2:183369/97‑1 (MQ=37) aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCGTGGCCCCGAAGAGGCCGGGACAGACACCACAAAACCTCAg > 1:183369/1‑99 (MQ=25) cTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACg < 3:411417/149‑1 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGcc > 6:332313/1‑111 (MQ=38) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGcc < 5:332313/111‑1 (MQ=38) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGAAAAAACAAAACCTCAGTTTTTATACGCCCCCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCCTCCACAACGAACttg > 1:344823/1‑149 (MQ=255) ggCAGCCTTTTTTT‑TTTGTCCGGTCCCGGCCTC‑TGCGCGGCCTTGCCGGCGAAGTGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgttg < 6:402927/149‑1 (MQ=255) | AAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTC‑TTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTG > NC_002947/4740669‑4740947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |