New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	15 (0.250)	11/234	5.8	37.0%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988949	51 (0.850)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
Rejected: Coverage evenness skew score above cutoff.

CGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808020‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTG  <  NC_002947/5988949‑5988868                                                                                                                                                                                                                                                      CGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCTCCTGGGAGATCGAG                                                                                               >  4:413335/1‑149  GCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGAGTTTCAGCGACTGGGATG‑TCTACGCAGGGAGAGTTTAAGCGCCTCGGATATCGAGC                                                                                              >  6:42543/1‑149     GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCC                                                                                           <  1:219608/149‑1          TATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                      >  5:149716/1‑149             AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGAGTTTCAGCGACTGGGAGA‑TGTTCGCCCGGACAGTTTCAGCTCCTGGGAGATCGAGCGACGCCCGt                                                                                     >  4:59432/1‑146                 CAATGGGCGGAATTCGCGCTGTGGCGTGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGGTTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGC                                                                                <  1:105140/149‑1                       ccgcAATGCGCGCGTTGGCGGGCAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGAGTTTCAGCGCCGGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGC                                                                         <  7:173019/145‑1                       GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGAGTTTCAGCGACTGGGAGG‑TGGTCGCCGGGAGAGTTTCAGCGCCGGGGAGATCGAGCGCCGCCCGCGGGGCGCTTCGC                                                                         >  2:117022/1‑149                         GGAATTCGCGCTTTGGCGGTTAGGGGTTTGGCGGGAGGGTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGTGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGG                                                                       <  7:299849/149‑1                         GGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGG                                                                       <  7:39184/149‑1                           AATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTACGCCGGGGGATTTTAAGCGACTGGGAGG‑TTTTCGCCGGGACAGTTTCAGCGCCTATTACATCGAGCCCCACACGCGCGGCGCGTCGCGGG                                                                      >  1:116880/1‑149                                      TGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTC                                                           <  6:149716/148‑1                                              cccggtgTGGCGCGAGGTGCTCAGCCGCTGGGAGGTGTT‑CGCCGGGGGCTGTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGT                                                     <  7:314391/139‑1                                                GTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTT                                                >  5:143920/1‑149                                                                                GTGTT‑CGCCGGGGGA‑TTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTAC                                                       >  2:123710/1‑109                                                                                GTGTT‑CGCCGGGGGA‑TTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTAC                                                       <  1:123710/109‑1                                                                                    ttgggCGGGGTCTTTTCAGCGGCTGGGTGG‑TGTTCGGCGGGAGATTTTCAGCGCCTGGGAGATCGAGCGGCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGAC             <  2:116880/143‑1                                                                                          GGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTT       >  8:157108/1‑149                                                                                               ATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGgggc  <  7:157108/149‑5                                                                                               ATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCAGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGgggc  <  3:413335/149‑5                                                                                                                                                                                                                                                      CGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTT‑CGCCGGGGGATTTTCAGCGCCTGGGAGG‑TGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808020‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTG  <  NC_002947/5988949‑5988868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.