New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5224500 =	5 (0.070)	10 (0.220) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA	9/178	4.9	34.3%	intergenic (‑204/+175)	PP_4603/PP_4604	transposase/DMT superfamily permease
	?	NC_002947	5545626 =	54 (0.770)					intergenic (‑766/+111)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
Rejected: Coverage evenness skew score above cutoff.

AACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACC  >  NC_002947/5224492‑5224644         |                                                                                                                                                 aaCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGtt      <  5:378861/149‑1 (MQ=32)    aaaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGAACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTCGGTGATCTCCTACAGGTCGGTTTAc   >  2:31315/1‑149 (MQ=16)     aaagaaaaGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCCGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc  >  8:366070/5‑149 (MQ=11)     aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc  >  2:112401/1‑149 (MQ=35)     aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc  <  7:203321/149‑1 (MQ=35)     aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGGCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc  <  2:282635/149‑1 (MQ=25)         |                                                                                                                                                 AACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACC  >  NC_002947/5224492‑5224644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.