New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5453138	6 (0.090)	10 (0.220) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA	9/178	4.9	33.9%	intergenic (+151/‑204)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase
	?	NC_002947	5545626 =	54 (0.770)					intergenic (‑766/+111)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
Rejected: Coverage evenness skew score above cutoff.

CGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGT  >  NC_002947/5452992‑5453151                                                                                                                                                   |              cGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGc             >  3:254396/1‑149 (MQ=40)  gATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCt            >  4:406847/1‑149 (MQ=39)  gATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCt            >  7:2068/1‑149 (MQ=39)    tACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt          >  3:365342/1‑149 (MQ=38)    tACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt          <  4:65312/149‑1 (MQ=38)            cACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGt  >  1:70735/1‑149 (MQ=31)                                                                                                                                                   |              CGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGT  >  NC_002947/5452992‑5453151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.