| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,842,896 | 0 | C | . | 24.7% | 191.3 / 65.4 | 79 | intergenic (+40/‑257) | ccoP‑II/PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (29/29); new base . (9/10); total (40/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.98e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCGAA > NC_002947/4842749‑4843040 | gggCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca < 6:412946/149‑1 (MQ=255) ccGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCt‑t < 5:334625/148‑1 (MQ=255) ccGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCt‑t < 3:124794/148‑1 (MQ=255) gCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAg > 8:9567/1‑149 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGa > 4:129837/1‑138 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGa < 3:129837/138‑1 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAg > 1:241506/1‑147 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGAt > 2:206353/1‑138 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGAt < 1:206353/138‑1 (MQ=255) cAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATACT‑AGTAGGAg > 4:331160/1‑149 (MQ=255) aGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGc < 2:106504/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGGTTACGTCTACAGCCTGTCGCACCAGGCTGAGGCGGCCAAGGCTGAGTAAGGCAGGCCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGCgg < 5:5133/149‑1 (MQ=37) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTATCCCCGCTCCTACACAGGATCCT‑TGTAGGAGCgg < 1:52141/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCgg < 7:331918/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGCgg < 8:132813/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGCgg < 5:317562/149‑1 (MQ=255) aacaacTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCggg < 1:351526/149‑1 (MQ=255) aacTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGt > 2:162863/1‑137 (MQ=255) aacTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGt < 1:162863/137‑1 (MQ=255) cAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTAcc < 2:133318/147‑1 (MQ=255) aaCGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGaa > 7:299157/1‑147 (MQ=255) aaCGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGCTAAACCCGCTCCTACACCGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAaga < 6:207809/149‑1 (MQ=255) cGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAgg > 6:350103/1‑149 (MQ=255) gACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCGGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAg > 6:420863/1‑125 (MQ=38) gACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCAGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAg < 5:420863/125‑1 (MQ=38) acggTGCAGTTGCGGGCGGCTTCCGTATCCCGCTTGTCCCCCCCGGTTTCGCCGGCAACGTCTGATAACGCCTGCCCTGGCCTTTGCGCGGGAAACCCCGCTCCACCACCGCATCCT‑TTTCGGCGGGGT‑TTTACCCGCGAAGAGGCCgg < 8:122776/147‑1 (MQ=255) cggTGCACTTGGTGGGGGCTAACGTCTACCGCCTGTCGCACCTGGCTTAGCCGGCAATGGCTTATTACGGCAGGCCTGGCCTATTCGCGGTAAAACCCGCCCCTACACAGGACCCT‑GGTCGCTGGGGT‑TTTACCCGCGAAGAGGCCGGt < 2:241506/148‑1 (MQ=255) gCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTTAACCCGCTGCTACACCGGGTGCT‑TGGTGGAGCGGG‑GTTTCCCGCGAAGCGGCCGGGACTg > 1:2982/1‑149 (MQ=255) gCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCCCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTg < 5:350103/149‑1 (MQ=255) tGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGCggg < 2:351802/119‑1 (MQ=255) tGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAGCggg > 1:351802/1‑119 (MQ=255) tGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca < 8:143580/97‑1 (MQ=255) tGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca > 7:143580/1‑97 (MQ=255) aCGTCTACACCCAGACGCACCAGGCTGAGCCGGCAAAGGCTGAGTAAGGCAGGCCTGGCCTCTTAGCGGGTAAACACGATGGAGCACACGTAGCA‑TGTAGGAGCGGG‑TTTACCCGCGCAGGGGCCGCTACAGGCACCGCATTtctcc > 8:315972/1‑146 (MQ=255) tCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGTTTCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGc < 1:333359/149‑1 (MQ=255) tACAGCCTGTCGCACCAGGCTGGGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCAGCAACAACGGATCCG‑TGGAGGCGGGGG‑GTTACCCGCGAAGAGGCCGGTACAGGCACCGCAATTAGCGCAGGc > 7:64098/1‑147 (MQ=25) ctcAGCCTGGTGCGACAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCg > 6:5484/3‑100 (MQ=37) ctcAGCCTGGTGCGACAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCg < 5:5484/98‑1 (MQ=37) ccTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAg < 4:191898/93‑1 (MQ=25) ccTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑AGGATCCTGTGTAGGAg > 3:191898/1‑93 (MQ=25) gCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGAt < 7:269451/142‑1 (MQ=255) gCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATACT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGAt > 8:269451/1‑142 (MQ=255) cTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGac < 8:299157/149‑1 (MQ=255) ccGGCCAAGGTTTAGTTTGGCAGGCGTGGCCTCTTCGCGGGTAAACCCGCTCATACACAGGTCCCT‑TGTAGGAGCGGG‑TTTACCCGCTAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCg < 3:331160/149‑1 (MQ=37) gCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTTCCCGCGAAGAGGCCGGTACTGGCACAGCATTTATCGCAGGCAAGTGACCTGGATCAATTGACACCCGcc > 7:270596/1‑148 (MQ=255) gCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGa > 1:249688/1‑126 (MQ=255) tGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAagag > 1:300235/1‑82 (MQ=255) tGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGt > 1:106988/1‑149 (MQ=255) aGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCaa < 3:118211/126‑1 (MQ=255) tacgccaggcCTGGCCCCTTCGCGGGTAAACCCGCTCCTACACAGGTTCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCa < 2:126309/100‑1 (MQ=21) tAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTGCTACACAGGATCCT‑TGTAGGAGCGGGATTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCa > 1:126309/1‑106 (MQ=255) gcaggcCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATAcc < 2:106988/149‑1 (MQ=255) caggcCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTCGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCa < 4:102897/149‑1 (MQ=255) gccctggcctCTTCGCGGCTAAACCCGCTCCTACACAGGTTCCT‑TGTAGGCGCGGT‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACg < 8:270596/147‑1 (MQ=255) cctggcctCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGaa < 8:3099/149‑1 (MQ=255) ggcctCTTCGCGGGTAAACCCGCTCCTACACAGGGTCCT‑TGTAGGAGCGGG‑TTTTCCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACCCCCGCCATAac > 1:284121/1‑129 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACGGGCACAGCATTTAACGCAGGCAAGTGACCTGGATCAAATGACACCCGCCATAACACGTTTCATACCACGAACCCAAc > 6:349308/1‑149 (MQ=255) ctTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAAcgc > 5:358574/1‑149 (MQ=255) tCGCGGGTAAACCCCCACCAAAAAAGATACGG‑TGTAGGAGCGGG‑TTTAACCCCGAAGAGGCCGGTACTGGCACAGCATTTATCGCAGGCAAGTGACCAGGATCAATTGACACCCGCCATAACCCGTTTAAAACCACGAAccccaaccga > 8:335687/1‑142 (MQ=255) cgcgGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGa < 7:9567/148‑1 (MQ=255) ggTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAtt > 2:54022/1‑102 (MQ=255) ggTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAtt < 1:54022/102‑1 (MQ=255) tAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGa < 8:23864/142‑1 (MQ=255) tAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGa > 7:23864/1‑142 (MQ=255) tAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAgg > 4:223096/1‑149 (MQ=255) tAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAgg > 6:213557/1‑149 (MQ=255) aaaCCCGCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCa < 7:389296/122‑1 (MQ=255) aaaCCCGCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCa > 8:389296/1‑122 (MQ=255) cccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCg > 8:38909/1‑148 (MQ=255) cccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCg > 2:66277/1‑148 (MQ=255) ccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCt < 5:204320/86‑1 (MQ=255) ccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCt > 6:204320/1‑86 (MQ=255) ccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAtt < 4:336870/95‑1 (MQ=255) ccGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAtt > 3:336870/1‑95 (MQ=255) ccGCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCg > 5:218747/1‑147 (MQ=255) cGCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAg > 1:150522/1‑149 (MQ=255) gCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAg < 3:306006/141‑1 (MQ=255) gCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAg > 4:306006/1‑141 (MQ=255) gCTCCTACA‑AGGATCCTGTGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGt > 5:6024/1‑149 (MQ=255) cTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGc < 5:213557/147‑1 (MQ=255) cTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCg > 8:119169/1‑148 (MQ=255) cTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCg > 6:392434/1‑148 (MQ=255) acacAGGAACCT‑TGTATGAGCGGG‑TTTACCCGCTAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACCCCCGCCATAAGACGTTTCATACCACGAAGCCAACGCGAc < 3:390176/130‑1 (MQ=255) acaGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCGaa < 8:137730/146‑1 (MQ=255) acaGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCGaa > 7:137730/1‑146 (MQ=255) | GGGCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACGCGACTAAAGGTCGCAGTGCGAA > NC_002947/4842749‑4843040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |