Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,681,789:1 | +C | 10.9% | coding (79/1431 nt) | mltD → | membrane‑bound lytic murein transglycosylase D |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,681,789 | 1 | . | C | 10.9% | 164.0 / 16.2 | 46 | coding (79/1431 nt) | mltD | membrane‑bound lytic murein transglycosylase D |
Reads supporting (aligned to +/- strand): ref base . (19/22); new base C (3/2); total (22/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 |
AGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCA > NC_002947/4681652‑4681936 | aGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTtggtg < 5:40913/149‑1 (MQ=255) aGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTtggtg < 1:263376/149‑1 (MQ=255) gCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTggg < 3:324774/149‑1 (MQ=255) aaCTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTcgac > 1:329806/1‑148 (MQ=255) tttttCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGc > 2:182534/1‑121 (MQ=255) tttttCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGc < 1:182534/121‑1 (MQ=255) gCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATa < 1:150731/149‑1 (MQ=255) cccGGATACCTGTATCAGCCGATGTCTTACCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCAAGAGCACCCGTCAGCTCGACGAATCCGATAg > 1:235017/1‑149 (MQ=255) cTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTcgcgc > 2:28304/1‑149 (MQ=255) tATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGca > 2:199933/1‑149 (MQ=255) cccGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCC‑AATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCAc < 4:20533/146‑1 (MQ=255) aGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATc > 2:281816/1‑147 (MQ=255) gCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGca < 7:65464/124‑1 (MQ=255) gCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGca > 8:65464/1‑124 (MQ=255) aaCCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAAc < 6:82876/149‑1 (MQ=255) aCCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAAc < 2:329806/148‑1 (MQ=255) ccTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCt > 3:51525/1‑149 (MQ=255) ctctCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCTCTGGCAGCCCACCAAGGT‑GGCTGCCAGGGc > 7:85736/1‑79 (MQ=18) ctctCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCTCTGGCAGCCCACCAAGGT‑GGCTGCCAGGGc < 8:85736/79‑1 (MQ=18) ctctCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGAt < 4:85175/135‑1 (MQ=255) ctctCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGAt > 3:85175/1‑135 (MQ=255) aTTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTcc < 3:52929/146‑1 (MQ=255) aTTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCg > 3:190695/1‑149 (MQ=255) ttCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCaa > 3:123123/1‑132 (MQ=255) ttCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCaa < 4:123123/132‑1 (MQ=255) cGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCGCAAACCTTCCCCgctgc > 4:59003/1‑149 (MQ=255) gTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTAcc < 5:213099/115‑1 (MQ=255) gTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTAcc > 6:213099/1‑115 (MQ=255) cgcCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgccggc < 1:281816/149‑1 (MQ=255) gcCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgccggcc < 4:190695/149‑1 (MQ=255) cTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgccggccg > 5:266974/1‑148 (MQ=255) cccAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAg > 1:20689/1‑149 (MQ=255) ccAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgcc < 2:167531/138‑1 (MQ=255) ccAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgcc > 1:167531/1‑138 (MQ=255) ccAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgcc > 1:172929/1‑138 (MQ=255) ccAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAgcc < 2:172929/138‑1 (MQ=255) aaaTCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCaa < 1:88513/133‑1 (MQ=255) aaaTCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCaa > 2:88513/1‑133 (MQ=255) gcTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGcgccgc < 6:321904/143‑1 (MQ=255) gcTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGcgccgc > 5:321904/1‑143 (MQ=255) tgctcTGGCAGCCCACCAAGGT‑GGCTGCCAGGGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCt > 7:172966/5‑149 (MQ=255) ctcTGGCAGCCCACCAAGGT‑GGCTGCCAGGGCACCCGTCAGCTCGACGCATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGAGCCAGCACAAACCTTCCCAGCTGCTGGTCACGCCGGCCGAACAGGCGCCGCAGGATGTCTgg > 5:6202/3‑149 (MQ=255) cccTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCGCAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTgg < 3:59003/149‑1 (MQ=255) cTGGCAGCCCACCAAGGT‑GGCTGCCAGGGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGa < 8:172966/149‑1 (MQ=255) gCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAgcg < 2:20689/149‑1 (MQ=255) aG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCa < 1:28304/149‑1 (MQ=255) | AGGCCCGGAGCGGTTTCTAGAATCGCCGAACTTTTTCGCCCGGATACCTGTATCAGCCGATGTCTTCCCGTAGCCGCAGAACCTCTCATTCCGTCGCCCTGACGCGCCTGGCCCAAATCAGTGCGCTGGCCCTGGCAG‑CCACCTTGGTGGGCTGCCAGAGCACCCGTCAGCTCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCA > NC_002947/4681652‑4681936 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |