New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	121613 =	80 (1.410)	5 (0.090)	4/248	NT	6.3%	coding (1559/2136 nt)	katE	hydroperoxidase
	?	NC_002947	121651 =	73 (1.340)					coding (1597/2136 nt)	katE	hydroperoxidase

CACCAGCACAGCAATCTTGCGCCCCTTGATACCCACCGAACCTGGGTGGTTCATCTGGCTCAGCGCAGGCGATTGCGCCAACTGGCTACCCTTCACCTTCACCGTACCCGCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/121764‑121613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTGTGCTGGTGGCCGATGGCGTGGACGCTGCCAGCGTGGACAAA  >  NC_002947/121651‑121797                                                                                                                                                                                                                                                                                                             CACCAGCACAGCAATCTTGCGCCCCTTGATACCCACCGAACCTGGGTGGTTCATCTGGCTCAGCGCAGGCGATTGCGCCAACTGGCTACCCTTCACCTTCACCGTACCCGCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCG                                                                                                                                                        >  3:336138/1‑149    CAGCACAGCAATCTTGCGCCCCTTGATACCCACCGAACCTGGGTGGTTCATCTGGCTCAGCGCAGGCGATTGCGCCAACTGGCTACCCTTCACCTTCACCGTACCCGCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCG                                                                                                                                                     >  7:61951/1‑149                                                                                                              GCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTG                                           >  8:89056/1‑149                                                                                                              GCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCT                                            <  5:94671/148‑1                                                                                                              GCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCT                                            >  6:94671/1‑148                                                                                                                TTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTGTG                                         >  5:64692/1‑149                                                                                                                        CAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTGTGCTGGTGGC                                 <  7:89056/149‑1                                                                                                                                                       CGAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTGTGCTGGTGGCCGATGGCGTGGACGCTGCCAGCGTGGACAAA  >  2:54796/1‑149                                                                                                                                                                                                                                                                                                             CACCAGCACAGCAATCTTGCGCCCCTTGATACCCACCGAACCTGGGTGGTTCATCTGGCTCAGCGCAGGCGATTGCGCCAACTGGCTACCCTTCACCTTCACCGTACCCGCTTTCGGCGCAGGGAGGCCCAGGTTGGCCGCAACTGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/121764‑121613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgAAAGCGGGTACGGTGAAGGTGAAGGGTAGCCAGTTGGCGCAATCGCCTGCGCTGAGCCAGATGAACCACCCAGGTTCGGTGGGTATCAAGGGGCGCAAGATTGCTGTGCTGGTGGCCGATGGCGTGGACGCTGCCAGCGTGGACAAA  >  NC_002947/121651‑121797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.