New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 107309449 (0.870)4 (0.070) 4/246 NT 7.6% coding (299/1446 nt) gatB aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B
?NC_002947 = 1073186 50 (0.930)coding (207/1446 nt) gatB aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B

CGGGGTGCCGGCACGGTTCAGGTCGATGCCGGTGGAACCGCTGAAGTCTTCGTGCAGGCTCTTGCCGGCGTCTTCTTCCAGGTGTGCGCGGGTTACACCGATGCGCTTGATGGTGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1072943‑1073094
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgaGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCATCGG  <  NC_002947/1073186‑1073040
                                                                                                                                                                                                                                                                                                           
CGGGGTGCCGGCACGGTTCAGGTCGATGCCGGTGGAACCGCTGAAGTCTTCGTGCAGGCTCTTGCCGGCGTCTTCTTCCAGGTGTGCGCGGGTTACACCGATGCGCTTGATGGTGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGC                                                                                                                                                        <  5:347990/149‑1
                                        CTGAAGTCTTCGTGCAGGCTCTTGCCGGCGTCTTCTTCCAGGTGTGCGCGGGTTACACCGATGCTCTTGATGGTGCCGTCTTCCAGAGCGATGTCCAGGTGACCCTTGCCGAGATCGGCAAGCGCACCGTGTTCGCACGCAAGAACTAC                                                                                                                >  7:138854/1‑149
                                             GTCTTCGTGCAGGCTCTTGCCGGCGTCTTCTTCCAGGTGTGCGCGGGTTACACCGATGCGCTTGATGGTGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGCCGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTA                                                                                                           >  3:103167/1‑149
                                                                                                ACCGATGCGCTTGATGGAGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGCCGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCTGATCAGCCAGATGGACCTGCCGATCGT                                                        <  8:138854/149‑1
                                                                                                       CGCTTGATGGTGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGCCGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAA                                                  <  4:103167/148‑1
                                                                                                                                              cgCTTGCCGATCTCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCACGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAG          >  7:198887/3‑149
                                                                                                                                                  TGCCGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGTAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCA      >  6:139672/1‑149
                                                                                                                                                    CCGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGTAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCATC    <  5:139672/149‑1
                                                                                                                                                     CGAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTGCCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCATCG   >  8:155248/1‑149
                                                                                                                                                      GAGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCATCGG  >  6:159421/1‑149
                                                                                                                                                                                                                                                                                                           
CGGGGTGCCGGCACGGTTCAGGTCGATGCCGGTGGAACCGCTGAAGTCTTCGTGCAGGCTCTTGCCGGCGTCTTCTTCCAGGTGTGCGCGGGTTACACCGATGCGCTTGATGGTGCCGTCTTCCAGCGCGATGTCCAGGTGACCCTTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1072943‑1073094
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgaGATCGGCAAGCGCAACGTGTTCGCACGCAAGAACTACTTCTACCCCGACCTGCCCAAGGGCTACCAGATCAGCCAGATGGACCTGCCGATCGTCGGCAAGGGTCACCTGGACATCGCGCTGGAAGACGGCACCATCAAGCGCATCGG  <  NC_002947/1073186‑1073040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.