New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1182996 =	69 (1.220)	4 (0.070)	4/244	NT	6.2%	coding (1389/1458 nt)	mltF	membrane‑bound lytic murein transglycosylase F
	?	NC_002947	1183033 =	56 (1.050)					coding (1352/1458 nt)	mltF	membrane‑bound lytic murein transglycosylase F

AAGATGCTGCCGCGGCTGGCTCAGAAGCAGTGGTACCGGCAGACCAAGTACGGCTATGCCCGTGGGGGCGAACCGGTGCATTTCGTGGCCAACATCCGCCGTTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1183148‑1182996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGGCAGCATCTTCTTCACGTCCAGCCACTTGTTCGGGTTCAGC  >  NC_002947/1183033‑1183179                                                                                                                                                                                                                                                                                                              AAGATGCTGCCGCGGCTGGCTCAGAAGCAGTGGTACCGGCAGACCAAGTACGGCTATGCCCGTGGGGGCGAACCGGTGCATTTCGTGGCCAACATCCGCCGTTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGCTGGAAGGCCA                                                                                                                                                         <  5:151093/149‑1  AGATGCTGCCGCGGCTGGCTCAGAAGCAGTGGTACCGGCAGACCAAGTACGGCTATGCCCGTGGGGGCGAACCGGTGCATTTCGTGGCCAACATCCGCCGTTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAG                                                                                                                                                        <  5:149411/149‑1  AGATGCTGCCGCGGCTGGCTCAGAAGCAGTGGTACCGGCAGACCAAGTACGGCTATGCCCGTGGGGGCGAACCGGTGCATTTCGTGGCCAACATCCGCCGTTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAG                                                                                                                                                        <  5:287666/149‑1                                                                                                                      ACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTGAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGG                                          <  3:266573/143‑1                                                                                                                      ACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTGAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGG                                          >  4:266573/1‑143                                                                                                                       CCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTGAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCC                                                                                    >  5:70230/1‑100                                                                                                                       CCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTGAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCC                                                                                    <  6:70230/100‑1                                                                                                                                                     AGGTGAGGATGTCGTAGTAACGGCGGATGTTGGTCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGGCAGCATCTTCTTCACGTCCAGCCACTTGTTCGGGTTC     <  5:121062/149‑1                                                                                                                                                        TGAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGGCAGCATCTTCTTCACGTCCAGCCACTTGTTCGGGTTCAGC  <  6:134175/149‑1                                                                                                                                                                                                                                                                                                              AAGATGCTGCCGCGGCTGGCTCAGAAGCAGTGGTACCGGCAGACCAAGTACGGCTATGCCCGTGGGGGCGAACCGGTGCATTTCGTGGCCAACATCCGCCGTTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGCTGGAAGGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1183148‑1182996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgAGGATGTCGTAGTAACGGCGGATGTTGGCCACGAAATGCACCGGTTCGCCCCCACGGGCATAGCCGTACTTGGTCTGCCGGTACCACTGCTTCTGAGCCAGCCGCGGCAGCATCTTCTTCACGTCCAGCCACTTGTTCGGGTTCAGC  >  NC_002947/1183033‑1183179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.