New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 1821299NA (NA)4 (0.070) 3/244 NT NA coding (1062/1422 nt) PP_1624 group II intron‑encoding maturase
?NC_002947 = 2070624 NA (NA)coding (998/1422 nt) PP_1846 group II intron‑encoding maturase

GCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1821146‑1821299
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  NC_002947/2070624‑2070477
                                                                                                                                                                                                                                                                                                              
GCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGC                                                                                                                                                           <  6:319499/149‑1
   GACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCG                                                                                                                                                          >  8:242753/1‑147
    ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA                                                                                                                                                        <  6:269691/148‑1
    ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA                                                                                                                                                        <  6:149968/148‑1
                                                                                  CAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC                                                                                                                                                      <  3:219565/72‑1
                                                                                  CAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC                                                                                                                                                      >  4:219565/1‑72
                                                                                     CCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTT                                                                      >  6:346040/1‑149
                                                                                        AGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCAC                                                                   >  5:291821/1‑149
                                                                                         ggCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGACTCAGAATGCTGCTGCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACC                                                                  >  3:197796/3‑149
                                                                                                      AAGGATGAGCCTAGACCGCTTACGCGACCGACTCAGAATGCTGCTGCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGAC                                                     <  4:197796/149‑1
                                                                                                                                                 accaGCAGCCAAGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCGTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCC          >  8:129118/5‑149
                                                                                                                                                 accaGCAGCCAAGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC                                                            <  4:67678/95‑1
                                                                                                                                                 accaGCAGCCAAGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC                                                            >  3:67678/5‑99
                                                                                                                                                   GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGG        <  8:40607/149‑1
                                                                                                                                                    CGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGC       <  4:109258/149‑1
                                                                                                                                                     GCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCC      <  4:241888/149‑1
                                                                                                                                                     GCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCC      >  5:69593/1‑149
                                                                                                                                                      CAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCC     <  1:297267/149‑1
                                                                                                                                                      CAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCC     <  2:241571/149‑1
                                                                                                                                                       AGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCG    >  4:275460/1‑149
                                                                                                                                                        GCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG   <  6:27903/149‑1
                                                                                                                                                        GCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG   <  6:69593/149‑1
                                                                                                                                                         CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  5:315243/149‑1
                                                                                                                                                         CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  8:48015/149‑1
                                                                                                                                                         CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  7:284506/149‑1
                                                                                                                                                         CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  2:343857/149‑1
                                                                                                                                                         CCTTGGCTGCTGGTGCCAGCTCAGCCCATAGCCTAGGTAGGCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGGCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  8:52699/149‑1
                                                                                                                                                                                                                                                                                                              
GCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1821146‑1821299
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  NC_002947/2070624‑2070477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.