New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 18441370 (0.000)31 (0.570) 29/250 NT 49.2% coding (657/2754 nt) gacS sensor protein GacS
?NC_002947 2177702 = 64 (1.170)intergenic (+103/‑63) PP_5485/PP_1931 GNAT family acetyltransferase/hypothetical protein

GATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843993‑1844137
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAA  >  NC_002947/2177702‑2177847
                                                                                                                                                                                                                                                                                                   
gagTTCTATGGTTTCCAGGTGCTGGCGCAGGGGTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGTGCATTCTGCAGTGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCC                                                                                                                                                   <  8:160505/143‑1
    TCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTG                                                                                                                                             <  3:127552/148‑1
      GATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGT                                                                                                                                          >  8:228119/1‑149
        TGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGA                                                                                                                                        <  4:350869/149‑1
               CAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCAGGGTCCAGACTGTGTGAAAACGCC                                                                                                                                 >  5:164035/1‑149
                     CTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGG                                                                                                                            <  3:274017/148‑1
                        GCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTT                                                                                                                          <  5:129754/147‑1
                                    GGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTG                                                                                                             <  7:170449/148‑1
                                          CTGGTCGATGCTGTGTTGGAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCT                                                                                                                      <  1:308545/133‑1
                                          CTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTG                                                                                                                                           <  4:14337/112‑1
                                             GTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTG                                                                                                    <  1:342060/148‑1
                                                 ATGCTGTGTTTCAATTCTTCGTGGTCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGTTTGTCTAACCTTGTGGTCTTCGTGACCGT                                                                                               <  8:46782/149‑1
                                                    CTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGG                                                                                            <  7:228119/149‑1
                                                    CTGTGTTGCAGTGCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGG                                                                                            <  1:155559/149‑1
                                                                          CATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATC                                                                      >  7:6322/1‑149
                                                                                 CAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGC                                                                              <  3:69178/134‑1
                                                                                 CAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGC                                                                              >  4:69178/1‑134
                                                                                                    TTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTA                                             >  8:330025/1‑148
                                                                                                          CCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGA                                                              >  8:21214/1‑125
                                                                                                          CCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGA                                                              <  7:21214/125‑1
                                                                                                              GGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATT                                         >  4:82165/1‑142
                                                                                                              GGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATT                                         <  3:82165/142‑1
                                                                                                                 CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAG                               >  3:244697/1‑149
                                                                                                                 CCAGTTCGTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTCTCTACCCTTCTGCTCGTCGTGACCGTGGGGACAATCATGAAGCGATACATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAG                               >  5:371437/1‑149
                                                                                                                        GTCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTG                         <  8:6322/148‑1
                                                                                                                         TCCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGA                       >  2:195403/1‑149
                                                                                                                          CCAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGAC                      >  2:178500/1‑149
                                                                                                                           CAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGAC                      >  5:346512/1‑148
                                                                                                                           CAGCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGAC                      <  1:178500/148‑1
                                                                                                                             GCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCAT                                                                                   >  4:290045/1‑85
                                                                                                                             GCTCATGGCTGCCCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCAT                                                                                   <  3:290045/85‑1
                                                                                                                                 ATGGCTGGCGATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGGGGGGACACTCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTAC                <  6:371437/148‑1
                                                                                                                                         CCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT       >  4:111822/1‑149
                                                                                                                                         CCATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT       >  7:59012/1‑149
                                                                                                                                          CATGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT       >  1:131539/1‑148
                                                                                                                                             GGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAA    >  5:194287/1‑148
                                                                                                                                              GTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGGCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAA  <  6:164035/149‑1
                                                                                                                                                                                                                                                                                                   
GATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843993‑1844137
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGATGAAAA  >  NC_002947/2177702‑2177847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.