New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2050559 =	35 (0.620)	4 (0.100)	4/184	NT	20.0%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2050669 =	7 (0.170)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

CGCCGCGGGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2050735‑2050559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTG  >  NC_002947/2050669‑2050811                                                                                                                                                                                                                                                                                                                                  CGCCGCGGGCGGGAGCTTAACCTGTCACCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGC                                                                                                                                                                              <  1:109352/148‑1    CGCGGGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGT                                                                                                                                                                          >  8:191266/1‑149         GCGGGAGCTTAACCTTTCTCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGTCTCTGTGACATCCCCGTAGGAGC                                                                                                                                                                              <  7:321831/140‑1         GCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGCTATTGCGTAACCTGTGCGGTCCTCTACGCGGGTGAACCCGCTCCTACAGGCACCCCCCCGTCATCGGGCTCTGTGACATCCCCGTAGGAGC                                                                                                                                                                              >  8:321831/1‑140                CTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                               <  7:191266/148‑1                CTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTA                                                                                                                                                                                   >  1:36626/1‑128                CTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTA                                                                                                                                                                                   <  2:36626/128‑1                     CCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                                                                                                  >  2:109130/1‑124                     CCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                                                                                                  <  1:109130/124‑1                                                                             GCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGT                                                                                                                                                                                    <  6:187871/66‑1                                                                             GCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGT                                                                                                                                                                                    >  5:187871/1‑66                                                                                              CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTC                                                                                          <  4:222954/139‑1                                                                                              CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTC                                                                                          >  3:222954/1‑139                                                                                               CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGC                                                                               >  4:148063/1‑149                                                                                                                                   TGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCAC                                             <  3:148063/147‑1                                                                                                                                             GTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAG                                 >  3:323354/1‑149                                                                                                                                             GTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAG                                 >  7:152457/1‑149                                                                                                                                                 GAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGC                                                        >  5:368741/1‑122                                                                                                                                                 GAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGC                                                        <  6:368741/122‑1                                                                                                                                                      GGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGC                                      >  5:87481/1‑135                                                                                                                                                      GGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGC                                      <  6:87481/135‑1                                                                                                                                                        TTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGC                      >  2:8180/1‑149                                                                                                                                                           ACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAACCGAACGCCCAGCCACAGCAGCAACAACCCAG                   >  3:209840/1‑149                                                                                                                                                           ACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAG                   >  5:47609/1‑149                                                                                                                                                               GCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCAC               >  1:152644/1‑149                                                                                                                                                                     AGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAG         <  6:47609/149‑1                                                                                                                                                                       GCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGA       >  5:47982/1‑149                                                                                                                                                                       GCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGA       >  2:107903/1‑149                                                                                                                                                                            CACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTG  >  1:109319/1‑149                                                                                                                                                                                                                                                                                                                                  CGCCGCGGGCGGGAGCTTAACCTGTCGCCGCACCTGATGAAGAAGCACGATTGATGGTTTTGCGTAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2050735‑2050559 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTG  >  NC_002947/2050669‑2050811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.