| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2172021 = | 65 (1.150) | 4 (0.070) | 4/244 | NT | 6.3% | coding (408/561 nt) | PP_1924 | phosphinothricin N‑acetyltransferase |
| ? | NC_002947 | 2172082 = | 58 (1.080) | coding (347/561 nt) | PP_1924 | phosphinothricin N‑acetyltransferase | |||||
ACGGTGTATGTCGCTGAAGGGCAACGCCGCAGTGGGATTGCTCGCCAACTCTATGACGTGCTGCTGCCGGTTCTGAAGCGTCTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2172170‑2172021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgaTATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCAGCGACATACACCGTCACATCCACCGCCCACCGGTACGCCGCACGCGCGCGGTGCTGACTGGCGTAGGCATAGC > NC_002947/2172082‑2172229 cgttctTATGTCGCTGAAGGGCAACGCCGCAGTGGGATTGCTCGCCAACTCTATGACGTGCTGCTGCCGGTTCTGAAGCGTCTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGC < 1:222212/142‑1ACGGTGTATGTCGCTGAAGAGCAACGCCGCAGTGGGATTGCTCGCCAACTCTATGACGTGCTGCTGCCGGTTCTGAAGCGTCTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGC < 6:145863/148‑1 ATGTCGCTGAAGGGCAACGCCGCAGTGGGATTGCTCGCCAACTCTATGACGTGCTGCTGCCGGTTCTGAAGCGTCTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGC > 2:222212/1‑141 CTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGCGATATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCA < 3:340067/144‑1 CTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGCGATATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCA > 4:340067/1‑144 TGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGCGATATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCAGCGACA > 6:243172/1‑149 GGATATCGCTCGGCGTATGCCGGCATTGCCTTGCGGAATGAAGGCAGTGTCGGGCTGCACGAGCGATATCCCAGACGCTGCAGAACCGCCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCCGCGACAga > 8:234602/1‑147 CGAGCGATATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCAGCGACATACACCGTCACATCCACCGCCCACCGGTACGCCGCACGCGCGCGGTGCTGACTGGCGTAGG < 4:208328/149‑1 ATATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCAGCGACATACACCGTCACATCCACCGCCCACCGGTACGCCGCACGCGCGCGGTGCTGACTGGCGTAGGCATAGC > 7:229032/1‑149 ACGGTGTATGTCGCTGAAGGGCAACGCCGCAGTGGGATTGCTCGCCAACTCTATGACGTGCTGCTGCCGGTTCTGAAGCGTCTGGGATATCGCTCGGCGTATGCCGGCATTGCCTTGCCGAATGAAGGCAGTGTCGGGCTGCACGAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2172170‑2172021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgaTATCCCAGACGCTTCAGAACCGGCAGCAGCACGTCATAGAGTTGGCGAGCAATCCCACTGCGGCGTTGCCCTTCAGCGACATACACCGTCACATCCACCGCCCACCGGTACGCCGCACGCGCGCGGTGCTGACTGGCGTAGGCATAGC > NC_002947/2172082‑2172229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |