| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2734791 | 57 (1.010) | 4 (0.070) | 4/246 | NT | 6.8% | coding (1689/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | = 2734827 | 56 (1.040) | coding (1725/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein | |||||
CTGGCACAATGACGATGAACAGTGGCAATTGCTCCCTTACCAGGGCTATGCGCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2734683‑2734791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGGCTGTTCGCACCACAGCCGCCACGCACCGGCCCCATTGTGACGGAGCGGCGGCGCATAGCCCTGGTAAGGGAGCAATTGCCACTGTTCATCGTCATTGTGCCAG < NC_002947/2734827‑2734683 CTGGCACAATGACGATGAACAGTGGCAATTGCTCCCTTACCAGGGCTATGCGCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTC < 1:134602/145‑1CTGGCACAATGACGATGAACAGTGGCAATTGCTCCCTTACCAGGGCTATGCGCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTC > 2:134602/1‑145 GCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGG < 5:112764/100‑1 GCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGG > 6:112764/1‑100 CCGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGGCTGTTCGCACCACAGCCGCCACGCACCGGCCCCATTGTGACGGAGCGGCGGCGCATAGCCCTGGTAAGGGACCAATTGCCACTGTTCATCGTCATTGTGCCA < 1:29385/149‑1 CGCCCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGGCTGTTCGCACCACAGCCGCCACGCACCGGCCCCATTGTGACGGAGCGGCGGCGCATAGCCCTGGTAAGGGAGCAATTGCCACTGTTCATCGTCATTGTGCCAG < 8:202663/149‑1 CTGGCACAATGACGATGAACAGTGGCAATTGCTCCCTTACCAGGGCTATGCGCCGCCGCTCCGTCACAATGGGGCCGGTGCGTGGCGGCTGTGGTGCGAACAGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2734683‑2734791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccCAGGCGGCGGAACAACTGGCGTGTGTCGCCCCACTCGGCGGGCTGTTCGCACCACAGCCGCCACGCACCGGCCCCATTGTGACGGAGCGGCGGCGCATAGCCCTGGTAAGGGAGCAATTGCCACTGTTCATCGTCATTGTGCCAG < NC_002947/2734827‑2734683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |