| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3117723 = | 55 (0.970) | 7 (0.130) | 7/248 | NT | 12.6% | coding (859/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| ? | NC_002947 | 3117758 = | 44 (0.810) | coding (824/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase | |||||
GTTTCGATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACC‑AGCGCTATGCCCAGGCGCAGCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3117873‑3117723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGC > NC_002947/3117758‑3117902 GTTTCGATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACC‑AGCGCTATGCCCAGGCGCAGCGCTCGG < 8:12542/148‑1 GAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCGAGCGCTGCGCCTGGGCATAGCGCT‑GGTCGCGGATGG < 2:312655/149‑1 ATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACCGAGCGCTGCGCCTGGGCATAGCGCT‑GGTCGCGGATGGTGA < 4:288025/149‑1 TCCGCGACC‑AGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGA < 5:273102/130‑1 TCCGCGACC‑AGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGA > 6:273102/1‑130 ACC‑AGCGCTATGCCCAGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAAC > 5:48359/1‑149 AGGCGCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGT < 1:312655/149‑1 GCAGCGCTCGGTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCT < 3:288025/149‑1 GTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGC < 3:68395/149‑1 GTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGC > 4:282705/1‑149 GTCGCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCG < 7:327425/148‑1 GTTTCGATCGAGATGATCGAAGCGGTCGGTCATCGCTACCTGCCGGTGTATTTCCGCCAGTGTGCTTCGCTGCTCAAGCCTGAAGGCCTGATGCTATTGCAGGCGATCACCATCCGCGACC‑AGCGCTATGCCCAGGCGCAGCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3117873‑3117723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgCGGATGGTGATCGCCTGCAATAGCATCAGGCCTTCAGGCTTGAGCAGCGAAGCACACTGGCGGAAATACACCGGCAGGTAGCGATGACCGACCGCTTCGATCATCTCGATCGAAACCAGTTTGTCGAACGTGCCTTGAAGGTCGC > NC_002947/3117758‑3117902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |