New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3279869 =	66 (1.170)	6 (0.110)	6/250	NT	9.8%	coding (211/594 nt)	PP_2879	hypothetical protein
	?	NC_002947	3279920 =	46 (0.840)					coding (160/594 nt)	PP_2879	hypothetical protein

CTGCCCGCCTGGGCAGTATCAAGTGTGCCTGATGGGCTGCTTCTGCGCCCCGATCGACCCAGGCCAGGCCGGGCAGATCCTCAAGGATGTGGAGGTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3280017‑3279869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGTTCGGCAAGCGCAGGGAGGGCCAATAGCAAACCCAGCAGGGCAC  >  NC_002947/3279920‑3280066                                                                                                                                                                                                                                                                                                          CTGCCCGCCTGGGCAGTATCAAGTGTGCCTGATGGGCTGCTTCTGCGCCCCGATCGACCCAGGCCAGGCCGGGCAGATCCTCAAGGATGTGGAGGTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCA                                                                                                                                                     <  7:79341/149‑1                                                 CCCGATCGACCCAGGCCAGGCCGGGCAGATCCTCAAGGATGTGGAGGTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGC                                                                                                                                                       <  1:69876/99‑1                                                 CCCGATCGACCCAGGCCAGGCCGGGCAGATCCTCAAGGATGTGGAGGTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGC                                                                                                                                                       >  2:69876/1‑99                                                                                               GTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGG                                                       >  1:207318/1‑149                                                                                                TCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGG                                                      >  6:284071/1‑149                                                                                                   TGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAG                                                   >  1:247431/1‑149                                                                                                     GCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGC                                                 <  2:207318/149‑1                                                                                                       CTCGTCCAGCCTGGCATACGCCTTGCGCCAGG‑CTG‑GACGAGGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGT                                             >  4:26866/1‑149                                                                                                           TCCAGCCTGGCATACGCCTTGCGCCAGG‑CTG‑GACGAGGCCATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGTTCGG                                         <  3:26866/149‑1                                                                                                                                                    CATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGTTCGGCAAGCGCAGGGAGGGCCAATAGCAAACCCAGCAGGGCAC  >  1:352275/1‑149                                                                                                                                                     ATGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGTTCGGCAAGCGCAGGGAGGGCCAATAGCAAACCCAGCAGGGCAC  >  2:189056/1‑148                                                                                                                                                                                                                                                                                                          CTGCCCGCCTGGGCAGTATCAAGTGTGCCTGATGGGCTGCTTCTGCGCCCCGATCGACCCAGGCCAGGCCGGGCAGATCCTCAAGGATGTGGAGGTCATGGCCTCGTCCAGCCTGGCATACGCCTTGCGCCAGGCCCGCGACGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3280017‑3279869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTGACCTCCACATCCTTGAGGATCTGCCCGGCCTGGCCTGGGTCGATCGGGGCGCAGAAGCAGCCCATCAGGCACACTTGATACTGCCCAGGCGGGCAGGCCTGTTCGGCAAGCGCAGGGAGGGCCAATAGCAAACCCAGCAGGGCAC  >  NC_002947/3279920‑3280066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.