New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3523512 =	NA (NA)	3 (0.060)	3/248	NT	NA	coding (225/1533 nt)	PP_3114	transposase
	?	NC_002947	3523555 =	NA (NA)					coding (268/1533 nt)	PP_3114	transposase

ATGGCATGTTTACGGCAGCCACAAGCGCAGGTCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3523664‑3523512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaaCGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTCCC  >  NC_002947/3523555‑3523700                                                                                                                                                                                                                                                                                                             ATGGCATGTTTACGGCAGCCACAAGCGCAGGGCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATC                                                                                                                                                        >  6:270720/1‑149  tgtCATGTTTACGGCATCCACAAGCGCAGGTCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCC                                                                                                                                                       <  7:50691/146‑1    GCATGTTTACGGCAGCCACAAGCGCAGGGCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAA                                                                                                                                                     <  5:270720/149‑1                       tAGCGCCGGGCAGTTCATGCTCGCGCCGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCGTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATC                                                                                                                                                        <  4:290531/126‑1                       AAGCGCAGGTCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATC                                                                                                                                                        >  3:290531/1‑127                                                         GACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAA                                                                                                                                                    >  3:215423/1‑97                                                         GACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAA                                                                                                                                                    <  4:215423/97‑1                                                                                                          CGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTA                                                >  6:201342/1‑148                                                                                                            GCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGT                                                          >  8:232961/1‑136                                                                                                            GCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGT                                                          <  7:232961/136‑1                                                                                                                                                     CCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTC    <  6:317352/149‑1                                                                                                                                                     CCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAG                       <  2:290346/130‑1                                                                                                                                                     CCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAG                       >  1:290346/1‑130                                                                                                                                                      CAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATG                                          <  7:204980/110‑1                                                                                                                                                      CAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATG                                          >  8:204980/1‑110                                                                                                                                                       AAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTCCC  >  7:206680/1‑149                                                                                                                                                       AAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTCC   <  7:42516/148‑1                                                                                                                                                       AAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTCC   >  8:42516/1‑148                                                                                                                                                                                                                                                                                                             ATGGCATGTTTACGGCAGCCACAAGCGCAGGTCAGTTCATGCTCGGGCAGTTCGTGGACGACTTCGATACGTGGCAAATCAGCTGGCAGCGGCTTGCGCTTGCCACGGCGTTTGGTTGGCGCAACGACTTCTTCGTCGTCAGCCTCATCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3523664‑3523512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaaCGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTTGCCACGTATCGAAGTCGTCCACGAACTGCCCGAGCATGAACTGACCTGCGCTTGTGGCTGCCGTAAACATGCCATCGGTGAAGAAGTCAGCGAACAACTTGAAATCGTCCC  >  NC_002947/3523555‑3523700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.