New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3879438	54 (0.960)	4 (0.070)	4/244	NT	7.3%	coding (1273/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3879489	51 (0.950)					coding (1324/3180 nt)	mexF	multidrug RND transporter MexF

CTTCGCGGTCATGCACCTGTTCGGTTTTTCACTTAACGCGCTGTCGTTATTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3879311‑3879438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGATGTTACGTTCGACGTTCTCCACCACGACGATGGCATCGTCCACCACGATACCGATGGCGAGCACCAGCCCGAATAACGACAGCGCGTTAA  <  NC_002947/3879489‑3879343                                                                                                                                                                                                                                                                                     CTTCGCGGTCATGCACCTGTTCGGTTTTTCACTTAACGCGCTGTCGTTATTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGCCGGTCACTTCGCTCATGGCCT                                                                                                                                >  1:173964/1‑149                                      GCGCTGTCGTTATTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGAT                                                                                           <  2:173964/149‑1                                                  TTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCC                                                                                               >  5:104752/1‑133                                                  TTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCC                                                                                               <  6:104752/133‑1                                                                                                                           TCGGGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGATGTTACGTTCGACGTTCTCCACCACGACGATGGCATCGTCCACCACGATACCGATGGCGAGCACCAGCCCGAATAACGACAGCGC       <  3:202873/148‑1                                                                                                                              GGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGC                                                                                                     <  1:178366/51‑1                                                                                                                              GGCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGC                                                                                                     >  2:178366/1‑51                                                                                                                               GCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGATGTTACGTTCGACGTTCTCCACCACGACGATGGCATCGTCCACCACGATACCGATGGCGAGCACCAGCCCGAATAACGACAGCGCGTTAA  <  4:77090/149‑1                                                                                                                               GCCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGATGTTACGTTCGACGTTCTCCACCACGACGATGGCATCGTCCACCACGATACCGATGGCGAGCACCAGCCCGAATAACGACAGCGCGTTAA  <  8:49643/149‑1                                                                                                                                                                                                                                                                                     CTTCGCGGTCATGCACCTGTTCGGTTTTTCACTTAACGCGCTGTCGTTATTCGGGCTGGTGCTCGCCATCGGTATCGTGGTGGACGATGCCATCGTCGTGGTGGAGAACGTCGAACGTAACATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3879311‑3879438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCGGTCACTTCGCTCATGGCCTTTTGCGTGGCTTCCAGCGGTTTCAGGCCCAGCCCGATGTTACGTTCGACGTTCTCCACCACGACGATGGCATCGTCCACCACGATACCGATGGCGAGCACCAGCCCGAATAACGACAGCGCGTTAA  <  NC_002947/3879489‑3879343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.