New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4249328 =	56 (0.990)	3 (0.060)	3/246	NT	5.3%	coding (699/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	4249377 =	53 (0.980)					coding (650/2118 nt)	PP_3724	acyl‑CoA synthetase

CTCGGTCGGCAACCAGGCGCAACTGGGTGTGGCCGAGCTGATGGATGTGCTGCTCGACGACCCACGGGTAACCGCCATCGGCCTGCACCTGGAAGGCTTGAAGAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4249481‑4249328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacgTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGT  >  NC_002947/4249377‑4249524                                                                                                                                                                                                                                                                                                                CTCGGTCGGCAACCAGGCGCAACTGGGTGTGGCCGAGCTGATGGATGTGCTGCTCGACGACCCACGGGTAACCGCCATCGGCCTGCACCTGGAAGGCTTGAAGAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGG                                                                                                                                                           >  5:14803/1‑149     GTCGGCAACCAGGCGCAACTGGGTGTGGCCGAGCTGATGGATGTGCTGCTCGACGACCCACGGGTAACCGCCATCGGCCTGCACCTGGAAGGCTTGAAGAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCAC                                                                                                                                                       >  1:130835/1‑149     GTCGGCAACCAGGCGCAACTGGGTGTGGCCGAGCTGATGGATGTGCTGCTCGACGACCCACGGGTAACCGCCATCGGCCTGCACCTGGAAGGCTTGAAGAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCAC                                                                                                                                                       >  6:319229/1‑149                                                                                                       GAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGC                                                     >  1:121613/1‑149                                                                                                        AACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTG                                                          <  5:50773/143‑1                                                                                                        AACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTG                                                          >  6:50773/1‑143                                                                                                                                                   AGGGCACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATG         <  2:121613/149‑1                                                                                                                                                        ACGTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAG    <  1:308466/149‑1                                                                                                                                                          GTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGT  >  1:167401/1‑149                                                                                                                                                                                                                                                                                                                CTCGGTCGGCAACCAGGCGCAACTGGGTGTGGCCGAGCTGATGGATGTGCTGCTCGACGACCCACGGGTAACCGCCATCGGCCTGCACCTGGAAGGCTTGAAGAACGTGCCGGGCTTTGCCCGCGCCGCTTGCAAGGCGCTGCAGCAGGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4249481‑4249328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacgTTCTTCAAGCCTTCCAGGTGCAGGCCGATGGCGGTTACCCGTGGGTCGTCGAGCAGCACATCCATCAGCTCGGCCACACCCAGTTGCGCCTGGTTGCCGACCGAGGCCATGTAGGCCACTGGCAGGGAGCGGTCGCTCATGGACAGGT  >  NC_002947/4249377‑4249524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.