New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4397566	48 (0.850)	4 (0.070)	4/252	NT	7.3%	coding (3/327 nt) coding (1291/1314 nt)	PP_3876 PP_3877	hypothetical protein hypothetical protein
	?	NC_002947	= 4397608	54 (0.980)					coding (1249/1314 nt)	PP_3877	hypothetical protein

CAGCGGCATATCCGCGCCAGTTTTTATCAAAAGTAACAATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4397439‑4397566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATGGGGTAGCTCCCTGTAACGCAGTACGCCCGGTACGCCGGGCCATCCTTTCCAATCTCCGGGAGCACCCCATGACCAAGGTCATTGTTACTTTTGATA  <  NC_002947/4397608‑4397463                                                                                                                                                                                                                                                                                    CAGCGGCATATCCGCGCCAGTTTTTATCAAAAGTAACAATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGACTTCGGTCCGCGCCACGTCGAA                                                                                                                               >  1:330187/1‑149                              AAAGTAACAATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGACTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATG                                                                                                  <  2:330187/149‑1                                      AATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGACTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATGGGG                                                                                               >  7:205985/1‑144                                      AATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGACTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATGGGG                                                                                               <  8:205985/144‑1                                                                                                                               ACTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATGGGGTAGCTCCCTGTAACGCAGTACGCCCGGTACGCCGGGCCATCCTTTCCAATCTCCGGGAGCACCCCATGACCAAGGTCATTGTTACTTTTGATA  >  4:136035/1‑148                                                                                                                                                                                                                                                                                    CAGCGGCATATCCGCGCCAGTTTTTATCAAAAGTAACAATGACCTTGGTCATGGGGTGCTCCCGGAGATTGGAAAGGATGGCCCGGCGTACCGGGCGTACTGCGTTACAGGGAGCTACCCCATTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4397439‑4397566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacTTCGGTCCGCGCCACGTCGAATCGGTCGCGGTGATGACCGATGTCAAATGGGGTAGCTCCCTGTAACGCAGTACGCCCGGTACGCCGGGCCATCCTTTCCAATCTCCGGGAGCACCCCATGACCAAGGTCATTGTTACTTTTGATA  <  NC_002947/4397608‑4397463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.