New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4974970	41 (0.730)	3 (0.060)	3/246	NT	6.7%	coding (634/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	= 4975025	45 (0.830)					coding (579/2043 nt)	flgK	flagellar hook‑associated protein FlgK

ACGAGTCATAGTTGATGCGCAGGGCAACCTGGCTCTTGTCGGCCACACCCGGCTCCACCGACAAGGTGTTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4974820‑4974970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccccCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAGGAGCGTGATGGCAACTACGACGTGTATCTGGGCAGTGGCCAATCGCTGGTCACCGGAACCAAGGCCAACACCTTGTC  <  NC_002947/4975025‑4974879                                                                                                                                                                                                                                                                                                            ACGAGTCATAGTTGATGCGCAGGGCAACCTGGCTCTTGTCGGCCACACCCGGCTCCACCGACAAGGTGTTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACC                                                                                                                                                       <  6:113017/149‑1                                         GGCCACACCCGGCTCCACCGACAAGGTGTTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCA                                                                                                                                                         <  1:266338/107‑1                                         GGCCACACCCGGCTCCACCGACAAGGTGTTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCA                                                                                                                                                         >  2:266338/1‑107                                                                     TTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACCCCCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGG                                                                                    <  3:304700/148‑1                                                                                         CAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACCCCCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAG                                                                               >  5:51848/1‑133                                                                                         CAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACCCCCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAG                                                                               <  6:51848/133‑1                                                                                                                                                   ACCCCCAACAGCCTGTTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAGGAGCGTGATGGCAACTACGACGTGTATCTGGGCAGTGGCCAATCGCTGGTCACCGGAACCAAGGCCAACACCTT     >  3:82140/1‑149                                                                                                                                                      CCCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAGGAGCGTGATGGCAACTACGACGTGTATCTGGGCAGTGGCCAATCGCTGGTCACCGGAACCAAGGCCAACACCTTGTC  <  6:243732/149‑1                                                                                                                                                                                                                                                                                                            ACGAGTCATAGTTGATGCGCAGGGCAACCTGGCTCTTGTCGGCCACACCCGGCTCCACCGACAAGGTGTTGGCCTTGGTTCCGGTGACCAGCGATTGGCCACTGCCCAGATACACGTCGTAGTTGCCATCACGCTCCTGCACCGTCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4974820‑4974970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccccCAACAGCCTGCTGGATGCGCGCAGCGAAGCCGTGCGCCAGCTCAACGAGCTGGTAGGGGTGACGGTGCAGGAGCGTGATGGCAACTACGACGTGTATCTGGGCAGTGGCCAATCGCTGGTCACCGGAACCAAGGCCAACACCTTGTC  <  NC_002947/4975025‑4974879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.