New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5256691	43 (0.760)	3 (0.060)	3/248	NT	6.8%	coding (185/342 nt)	PP_5703	type III effector protein HopJ
	?	NC_002947	= 5256717	41 (0.750)					coding (211/342 nt)	PP_5703	type III effector protein HopJ

CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5256541‑5256691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCCAA  <  NC_002947/5256717‑5256570                                                                                                                                                                                                                                                                                                             CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAA                                                                                                                                                        <  1:54098/149‑1                         ATACCTCGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAG                                                                                                                                                       <  5:24172/126‑1                         ATACCTCGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAG                                                                                                                                                       >  6:24172/1‑126                                        TTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAA                                                                                                                 <  5:210360/149‑1                                                                       CTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAA                                                                                                                     <  1:216260/114‑1                                                                       CTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAA                                                                                                                     >  2:216260/1‑114                                                                                                                                                   GAAGGCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACG      <  7:134514/149‑1                                                                                                                                                       GCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCCAA  <  5:310886/149‑1                                                                                                                                                                                                                                                                                                             CCAGCGGCCAACATGTATTTGCCGATACCTTGGCGTTCATTGCCGACAACTACAGCTACCAGCCGCAGGCCTTCAACAACGGCGGCGTGGAGAATGCGGCAGGGCAGAACGAAGGTTCGTGCAAAACCCTGGGCCTGGCCTTGCTTGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5256541‑5256691 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggCCAGCAGCGCTTCCTGGTCGCTCAGCCCTTCAAGCAAGGCCAGGCCCAGGGTTTTGCACGAACCTTCGTTCTGCCCTGCCGCATTCTCCACGCCGCCGTTGTTGAAGGCCTGCGGCTGGTAGCTGTAGTTGTCGGCAATGAACGCCAA  <  NC_002947/5256717‑5256570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.