New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5339657 =	56 (0.990)	3 (0.060)	3/248	NT	5.4%	coding (885/1383 nt)	pcnB	poly(A) polymerase
	?	NC_002947	5339691 =	52 (0.960)					coding (919/1383 nt)	pcnB	poly(A) polymerase

GGTCGTGGGCCGCACCGTTCATGGCCGGGATCGGCGGCACGCCCTGGTTCTGCAGGTGCAGCACACGGGCCGGCAGGGCTGGCCAGAGCAGAGCAGCAAACAGGAAGGCTGGCGTCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5339805‑5339657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgACGCCAGCCTTCCTGTTTGCTGCTCTGCTCTGGCCAGCCCTGCCGGCCCGTGTGCTGCACCTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGAC  >  NC_002947/5339691‑5339804                                                                                                                                                                                                                                                                         GGTCGTGGGCCGCACCGTTCATGGCCGGGATCGGCGGCACGCCCTGGTTCTGCAGGTGCAGCACACGGGCCGGCAGGGCTGGCCAGAGCAGAGCAGCAAACAGGAAGGCTGGCGTCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTG                                                                                                                    <  4:16890/149‑1                                                                                                                  GTCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTGACGCCAGCCTTCCTGTTTGCTGCTCTGCTCTGGCCAGCCCTGCCGGCCCGTGTGCTGCACCTGC                                                    <  3:163339/100‑1                                                                                                                  GTCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTGACGCCAGCCTTCCTGTTTGCTGCTCTGCTCTGGCCAGCCCTGCCGGCCCGTGTGCTGCACCTGC                                                    >  4:163339/1‑100                                                                                                                   TCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTGACGCCAGCCTTCCTGTTTGCTGCTCTGCTCTGGCCAGCCCTGCCGGCCCGTGTGCTGCACCTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGAC  >  4:213626/1‑149                                                                                                                                                                                                                                                                         GGTCGTGGGCCGCACCGTTCATGGCCGGGATCGGCGGCACGCCCTGGTTCTGCAGGTGCAGCACACGGGCCGGCAGGGCTGGCCAGAGCAGAGCAGCAAACAGGAAGGCTGGCGTCACCGGCTTGCCCTGCTTCACGCGCAGGTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5339805‑5339657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgACGCCAGCCTTCCTGTTTGCTGCTCTGCTCTGGCCAGCCCTGCCGGCCCGTGTGCTGCACCTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGAC  >  NC_002947/5339691‑5339804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.