| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5487773 = | 55 (0.970) | 3 (0.060) | 3/244 | NT | 5.5% | coding (1102/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 5487844 = | 52 (0.970) | coding (1173/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator | |||||
ATGCCGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5487927‑5487773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGCAGACCATCCA > NC_002947/5487844‑5487990 ATGCCGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGAC < 2:100563/149‑1ATGCCGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGAC < 5:22253/149‑1 TGCCGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACC < 3:256239/149‑1 CGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGC > 2:76999/1‑148 AGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAG < 1:80772/149‑1 CGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGaacg > 3:343056/1‑145 CGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGCCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGC < 4:343056/142‑1 GGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCA > 5:29972/1‑149 CGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGC > 3:279353/1‑129 CGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGC < 4:279353/129‑1 ACTGACCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGC < 6:29972/149‑1 GCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGT > 1:202406/1‑132 GCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGT < 2:202406/132‑1 GCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGAATGACTGAACTGCTGCTGGGCACACCGCTGTCGATGAAGCAACGTGATTATGTGCAGACCATCCA > 4:316161/1‑148 ATGCCGAGCACGCCGTTCATCGGGGTGCGGATTTCGTGGCTGATCTTGGCCAGAAACTCGGCTTTGGCGTTGATTTCCGCATCGCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5487927‑5487773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccagCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGCAGACCATCCA > NC_002947/5487844‑5487990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |