New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5545321 =	NA (NA)	32 (0.570)	30/254	NT	82.3%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	7 (0.120)					coding (19/774 nt)	PP_4939	hypothetical protein

CCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545459‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCG  <  NC_002947/5621245‑5621104                                                                                                                                                                                                                                                                                            CCAAATGGCATCGGCGTTAATCCCAGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCA                                                                                                                                      >  6:219825/1‑149   AAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACG                                                                                                                                    <  1:85699/149‑1   AAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACG                                                                                                                                    >  2:85699/1‑149      TGGCATCGGCGTTAATCCCTGTCTGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTC                                                                                                                                 <  8:339968/149‑1          ATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCG                                                                                                                             >  4:120118/1‑149           TCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGT                                                                                                                            <  3:120118/149‑1              GCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGATGTGACGTCACGCTCGTCGTGcc                                                                                                                         >  6:252783/1‑147              GCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGAC                                                                                                                         >  7:60082/1‑149                GTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTAGTCGTGAC                                                                                                                         >  5:261353/1‑147                     TCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGT                                                                                                                  >  6:107549/1‑149                        CTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGG                                                                                                               >  7:167672/1‑149                             GGCACAGATTGCTTTGACCACGTATCTAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGT                                                                                                           <  8:167672/148‑1                                    CTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTG                                                                                                   >  7:101347/1‑149                                       GCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGC                                                                                                  <  5:140760/147‑1                                        CTGTGACCACGTATAGCAGCGTGCCCACTTCGCCGCCATTGACCCCGCGCGCCTGTTGTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCA                                                                                               <  8:259273/149‑1                                                   TATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGAAAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGTGCGGTTCGATCTGCTCAAAGACACCCTT                                                                                    >  3:209194/1‑149                                                    ATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGGTCGATCTGCTCAAAGACACCCTT                                                                                    >  2:287454/1‑148                                                       GAAGAGTGACCACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGA                                                                                  >  3:228559/1‑147                                                        AAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAG                                                                               >  5:139366/1‑149                                                        AAGAGTGAACACTTCGCCGCCATTGACACCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACAGCCTTGAGA                                                                                <  5:219825/148‑1                                                            cTGAAGAGTTCGCCGCCATTGACCCCGCTCGCCTGTTTTTTTCGCTATAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTC                                                                           <  4:209194/148‑1                                                            GTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTT                                                                            <  5:107549/148‑1                                                                                 ACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATAGTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACAC                                                                                        >  1:255449/1‑116                                                                                 ACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACAC                                                                                        <  2:255449/115‑1                                                                                 ACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CATTTGTTTGATAGAAGTGACGTCAAGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGATCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCC                                                       >  5:19323/1‑148                                                                                         CGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGA                                              <  6:139366/149‑1                                                                                               TTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATT                                        >  6:117823/1‑149                                                                                                 TTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTC                                       <  6:261353/148‑1                                                                                                       GCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATATAAGTGACGTCACGCTCGTCGTGACCAGTTTTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACC                                 <  5:252783/148‑1                                                                                                                  CAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTT                                                                                                                    <  7:341555/54‑1                                                                                                                  CAGTGGGTTAT‑CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTT                                                                                                                    >  8:341555/1‑54                                                                                                                                      TGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCG  >  4:65289/1‑149                                                                                                                                         TAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGC        >  6:189135/1‑140                                                                                                                                         TAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGC        <  5:189135/140‑1                                                                                                                                                                                                                                                                                            CCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAT‑CTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545459‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCG  <  NC_002947/5621245‑5621104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.