| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5817709 = | 64 (1.130) | 4 (0.080) | 4/238 | NT | 6.9% | coding (245/1011 nt) | pilT | twitching motility protein |
| ? | NC_002947 | 5817767 = | 49 (0.940) | coding (187/1011 nt) | pilT | twitching motility protein | |||||
CGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCGTTGAGCCAGGGTGCCTTGATCGAGGGCATGGCCAGCGTGCTGGATAACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817857‑5817709‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGC > NC_002947/5817767‑5817914 CGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCGTTGAGGCAGGGTGCCTTGATCGAGGGCATGGCCAGCGTGCTGGATAACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGC < 3:192750/148‑1 ATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAG > 6:6584/1‑149 CCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGC < 7:340127/110‑1 CCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGC > 8:340127/1‑110 CGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTC < 5:6584/149‑1 CGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATC < 2:237531/149‑1 GCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGG > 1:312654/1‑112 GCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGG < 2:312654/112‑1 TGATCGTTATCCAGCACGCTGGCCATGCCCTCGATAAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGC > 4:335928/1‑149 CGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCGTTGAGCCAGGGTGCCTTGATCGAGGGCATGGCCAGCGTGCTGGATAACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817857‑5817709‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcgctGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGC > NC_002947/5817767‑5817914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |