New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5908091	52 (0.920)	6 (0.120)	6/236	NT	10.6%	intergenic (‑125/+32)	spuE/spuD	spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	= 5908098	54 (1.040)					intergenic (‑132/+25)	spuE/spuD	spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein

CTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5907943‑5908091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctctgggccgGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT  <  NC_002947/5908098‑5907951                                                                                                                                                                                                                                                                                                           CTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCC                                                                                                                                                       >  4:23588/1‑148                    GACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCC                                                                                                                                   <  3:315619/149‑1                            GGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAA                                                                                                                            <  2:37034/148‑1                                                      AGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCC                                                                                                                                                       >  5:259569/1‑95                                                      AGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCC                                                                                                                                                       <  6:259569/95‑1                                                                                    GCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAG                                                                                                                                     >  5:242585/1‑83                                                                                    GCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAG                                                                                                                                     <  6:242585/83‑1                                                                                        GCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGA                                                                                                                                      >  7:133323/1‑78                                                                                        GCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGA                                                                                                                                      <  8:133323/78‑1                                                                                                                                             TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTAT          >  1:247911/1‑149                                                                                                                                             TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTAT          >  2:258278/1‑149                                                                                                                                             TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAACTGCGAAGTTAAGTTGCTCGCCGTTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTCATACTCAGGACCCCCACTTGTCTAT          >  4:160497/1‑149                                                                                                                                                    CGGGTTTTTCGGCCCATAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTA   <  3:160497/149‑1                                                                                                                                                     GGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT  <  3:44773/149‑1                                                                                                                                                                                                                                                                                                           CTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5907943‑5908091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctctgggccgGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT  <  NC_002947/5908098‑5907951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.