New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980103 =	51 (0.900)	3 (0.060)	3/242	NT	6.1%	coding (748/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980159 =	45 (0.850)					coding (804/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980258‑5980103 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAG  >  NC_002947/5980159‑5980306                                                                                                                                                                                                                                                                                                                  GCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGG                                                                                                                                                             <  1:1906/149‑1  CGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGC                                                                                                                                                            <  7:282848/149‑1                CGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTT                                                                                                                                                        >  7:160853/1‑139                CGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTT                                                                                                                                                        <  8:160853/139‑1                                                                      tCACTGCCAGCGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTT                                                                                                                                                        <  3:321947/84‑1                                                                      tCACTGCCAGCGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTT                                                                                                                                                        >  4:321947/2‑85                                                                                                  ACTGCAACGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGG                                                            <  5:120091/149‑1                                                                                                  ACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCACGCTGCGCCGACCCGGTAGCGCCCG                                                             >  6:120091/1‑148                                                                                                    TGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGC                                                           >  1:298117/1‑148                                                                                                                                                            CAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAG  <  7:43985/149‑1                                                                                                                                                                                                                                                                                                                  GCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGGGGTGAAGGGTGCCATGGTTTTGTGGGCGGCCCACTGCCGCTGGCAGTGAGCCAAGTCCACTGCAAAGGCGCGCGCGCTCTGGTAGCGGGCGTCCGGCTCTTTGGCCAAGGCCTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980258‑5980103 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAG  >  NC_002947/5980159‑5980306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.