New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 64435	43 (0.760)	4 (0.070)	4/244	NT	9.4%	coding (281/888 nt)	PP_0055	transcriptional regulator
	?	NC_002947	= 64458	36 (0.670)					coding (258/888 nt)	PP_0055	transcriptional regulator

ATGGATGCTGATTTCTGCCTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTGGGCATGTTGCACGAACAGCGCGGTC  >  NC_002947/64287‑64581                                                                                                                                                     |                                                                                                                                                   atggatgCTGATTTCTGCCTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGC                                                                                                                                                    <  6:71145‑M1/149‑1 (MQ=255)         tGATTTCTGCCTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCcatcaccc                                                                                                                                            >  1:320881‑M1/1‑141 (MQ=255)         tGATTTCTGCCGCGCGGTAGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTACCGCTCGAACAACGCGTTCATGCGTGGTGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTg                                                                                                                                            <  7:301014/149‑1 (MQ=255)          gATTTCTGCCTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGc                                                                                                                                           >  8:32039/1‑149 (MQ=255)                  ccTCGCGGTTGAGGATGCTGACGAAGCGTGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCggg                                                                                                                                   <  4:252752/149‑1 (MQ=255)                  ccTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCggg                                                                                                                                   <  5:141932/149‑1 (MQ=255)                   cTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCgggg                                                                                                                                  <  7:32039/149‑1 (MQ=255)                           tGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGgcc                                                                                                                          <  2:200224‑M2/149‑4 (MQ=255)                               gATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCcatcaccccgctgggcaagattcgcctggg                                                                                                                      <  2:320881‑M1/149‑31 (MQ=255)                                    tGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACACCGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGCGTGAtt                                                                                                                 >  7:46827/1‑149 (MQ=255)                                    tGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGAtt                                                                                                                 >  7:51908/1‑149 (MQ=255)                                    tGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGAtt                                                                                                                 >  5:337289/1‑149 (MQ=255)                                      aCGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGAtt                                                                                                                 >  6:181165/1‑147 (MQ=255)                                      aCGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGAtt                                                                                                                 <  5:181165/147‑1 (MQ=255)                                        gAAGCGCGGCACCGCTAACAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCACAGCGTGGTGAAGGCCTGGGTGATTtcct                                                                                                             >  1:106007/1‑149 (MQ=255)                                             gcgGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCtgt                                                                                                        <  3:207805/149‑1 (MQ=255)                                                  aCCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCATTCGGTTACCCCCAGCCGAATCTTCACCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcag                                                                                                   >  3:41783/1‑149 (MQ=255)                                                   ccGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagc                                                                                                  <  7:308089/149‑1 (MQ=255)                                                     gCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagcag                                                                                                <  5:90736/149‑1 (MQ=255)                                                       tACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagc                                                                                                  <  7:238813/145‑1 (MQ=255)                                                       tACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagc                                                                                                  >  8:238813/1‑145 (MQ=255)                                                        aCCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCcatcaccccgctgggcaagattcgcctgggg                                                                                                                     <  3:231320‑M1/125‑32 (MQ=255)                                                        aCCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCcatcaccccgctgggcaagattcgcctgggg                                                                                                                     >  4:231320‑M1/1‑94 (MQ=255)                                                                cACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagca                                                                                                 >  6:110104/1‑137 (MQ=255)                                                                cACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCcagca                                                                                                 <  5:110104/137‑1 (MQ=255)                                                                  ccTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGCGAACAACATGATGCCGATGCCTTCGGTTACCCCCGGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTcc                                                                                   <  8:192543/149‑1 (MQ=255)                                                                           cGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCg                                                                          <  1:200224/149‑1 (MQ=255)                                                                             gggTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCgg                                                                         >  5:221154/1‑148 (MQ=255)                                                                                     cTCGAACAACGCGTTCATGCGTGGGGTGAAGAACCTGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCGAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGGATGGtt                                                                  >  4:149858/1‑147 (MQ=255)                                                                                     cTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCAGATGCCTTCGGTTACCCCCATGCGAATCTTGCCCAGCGGGGTGATGGCGTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCtt                                                                  >  6:345441/1‑147 (MQ=255)                                                                                         aacaacGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAg                                                            <  6:221154/149‑1 (MQ=255)                                                                                                cgTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCGCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGa                                                     <  2:351204/149‑1 (MQ=255)                                                                                                 gTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGAc                                                    >  1:118016/1‑149 (MQ=255)                                                                                                    cATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGAccc                                                  >  2:269479/1‑148 (MQ=255)                                                                                                     aTGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGAccc                                                  >  8:316094/1‑147 (MQ=255)                                                                                                         gTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAgggg                                            >  5:355276/1‑149 (MQ=255)                                                                                                             ggTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGt                                          >  2:309313/1‑147 (MQ=255)                                                                                                             ggTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCa                                        <  4:41783/149‑1 (MQ=255)                                                                                                                  agaaCATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTc                                    <  1:309313/148‑1 (MQ=255)                                                                                                                   gaaCATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCg                                   >  1:7424/1‑148 (MQ=255)                                                                                                                    aaCATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTATGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGCTCAGCTCGTa                                 >  1:88858/1‑149 (MQ=255)                                                                                                                       atgatgCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGTGTGATGGCCTGGGTGATTTCCTCCTGTGCCACCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTAccc                              <  2:106007/149‑1 (MQ=255)                                                                                                                       atgatgCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTAccc                              <  2:118016/149‑1 (MQ=255)                                                                                                                            gccgatgccTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTgg                          <  7:316094/148‑1 (MQ=255)                                                                                                                              cgatgccTTCGGTTACCCCCAGGCGAATCATGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTGGGCa                       >  1:25686/1‑149 (MQ=255)                                                                                                                                     ttCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTGGGCATGTTGCa                >  8:67956/1‑149 (MQ=255)                                                                                                                                       cGGTTACCGCACGGCGAATCTTGGCCAGCGTGGTGATGGCCTGGTTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGTCATGCTTGATCAGGGCTTGACCCGAGGGGGTCAGCTCTTACCCCTGGGCATGTTGCa                <  8:46827/147‑1 (MQ=255)                                                                                                                                       cGGTTACCCCCAGGCGAAGCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGTCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTGGGCATGTTGCa                <  8:51908/147‑1 (MQ=255)                                                                                                                                              ccccAGGCGAATCTTGCCCAGCGGGGTGATGgcctgggggtaaccgaaggcatcggcatcatgttcttcaccccacgcatgaacgcgttgttcgagcgctaccccggcctggaggtggaattggt                               >  4:231320‑M2/1‑31 (MQ=255)                                                                                                                                              ccccAGGCGAATCTTGCCCAGCGGGGTGATGgcctgggggtaaccgaaggcatcggcatcatgttcttcaccccacgcatgaacgcgttgttcgagcgctaccccggcctggaggtggaattggt                               <  3:231320‑M2/125‑95 (MQ=255)                                                                                                                                               cccAGGCGAATCTTGCCCAGCGGGGTGATGgcctgggggtaaccgaaggcatcggcatcatgttcttcaccccacgcatgaacgcgttgttcgagcgctaccccggcctggaggtggaattggtagcggtgccgcgcttcgtcagcatc      <  2:320881‑M2/149‑120 (MQ=255)                                                                                                                                                ccAGGCGAATATTGCCCAGCGGGGTGATGGCCTGGGTGATTTCATCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTAGACCCGACGGCGTCAGCTCGTACCCCTGGGCATCTAGCACGAACAGcgcg     >  4:260297/1‑149 (MQ=255)                                                                                                                                                   ggCcatcaccccgctgggcaagattcgcctgggggtaaccgaaggcatcggcatcatgttcttcaccccacgcatgaacgcgttgttcgagcgctaccccggcctggaggtggaattggtagcggtgccgcgcttcgtcagcatcctca  <  2:200224‑M1/149‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ATGGATGCTGATTTCTGCCTCGCGGTTGAGGATGCTGACGAAGCGCGGCACCGCTACCAATTCCACCTCCAGGCCGGGGTAGCGCTCGAACAACGCGTTCATGCGTGGGGTGAAGAACATGATGCCGATGCCTTCGGTTACCCCCAGGCGAATCTTGCCCAGCGGGGTGATGGCCTGGGTGATTTCCTCCTGTGCCAGCAGGGCGACGTTCTCCATGGCTTCGGCATGCTTGAGCAGGGCTTGACCCGAGGGGGTCAGCTCGTACCCCTGGGCATGTTGCACGAACAGCGCGGTC  >  NC_002947/64287‑64581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.