New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 123239	37 (0.650)	3 (0.050)	3/252	NT	7.1%	coding (629/783 nt)	znuB	zinc ABC transporter permease
	?	NC_002947	= 123282	42 (0.760)					coding (586/783 nt)	znuB	zinc ABC transporter permease

TGGCAGGGCCAGGCTCAGCAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAGCGCAGGCCGGCCACGGGCAGGCCTT  >  NC_002947/123094‑123386                                                                                                                                                  |                                                                                                                                                    tGGCAGGGCCAGGCTCAGCAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGt                                                                                                                                                   <  6:275458/148‑1 (MQ=255)   gCAGGGCCAGGCTCAGCAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAg                                                                                                                                                >  5:95521/1‑149 (MQ=255)               tCAGCAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGgcgc                                                                                                                                    >  3:217820/1‑149 (MQ=255)                 aggaaGAATAGCACTGCGTCGCATTCCACGTTTGAGGGCCAGGAGGTGGTGTCCTTGAACCAGGACATGGCCAGGCCGCAGCACACCGCGGTGACACCCATCAGGCTGGCACACATGGCCATCTGCTCTGGTTAGCTGGCGTg                                                                                                                                        <  1:306414/140‑1 (MQ=255)                 aGCAAGAATAGCACTGCGGCGAAGACCACGATTGAGGGCCCGGCGCGGCTGTCCTTGAAACAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCAACAGGCTGGCACCCAGCGCCATATGCTCTGGTGAGCGGGCGTg                                                                                                                                        >  2:306414/1‑143 (MQ=255)                   cAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCtgtg                                                                                                                                <  6:119522/149‑1 (MQ=255)                     aGAATAGCCCTGCGGCGCAGACCTCGAGTGAGGGCCCGGCGGGGGTGGCCTTGAACCAGGCCATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGcc                                                                                                                              <  8:224423/149‑1 (MQ=255)                      gAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCg                                                                                                                             >  5:302678/1‑149 (MQ=255)                      gAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCg                                                                                                                             >  4:311929/1‑149 (MQ=255)                            cACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTG                                                                                                                                                     >  1:353527‑M1/1‑119 (MQ=255)                            cACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTG                                                                                                                                                     <  2:353527‑M1/119‑1 (MQ=255)                                 cggcgCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAgg                                                                                                                   <  3:311929/148‑1 (MQ=255)                                 cggcgCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAgg                                                                                                                   >  5:58436/1‑148 (MQ=255)                                 cggcgCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAg                                                                                                                    <  3:25990/147‑1 (MQ=255)                                  ggcgCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGaa                                                                                                                 <  3:115102/149‑1 (MQ=255)                                           cACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGca                                                                                                        >  6:302678‑M2/1‑147 (MQ=255)                                                   aGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGctgatcattcctgccgctgcggcacagcgccacgcccgctcaccagagcaga                                                                                                 <  1:212777‑M1/148‑53 (MQ=255)                                                     ggCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTaa                                                                                               >  8:200153/1‑148 (MQ=255)                                                     ggCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAAt                                                                                              <  6:58436/149‑1 (MQ=255)                                                          ggcggGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCa                                                                                         <  4:217820/149‑1 (MQ=255)                                                                    tCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCaa                                                                                <  1:106074/148‑1 (MQ=255)                                                                    tCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCaa                                                                                >  2:106074/1‑148 (MQ=255)                                                                      cTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAg                                                                                           <  3:353747/135‑1 (MQ=255)                                                                      cTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAg                                                                                           >  4:353747/1‑135 (MQ=255)                                                                      cTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGa                                                                             >  8:77048/1‑149 (MQ=255)                                                                      cTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGa                                                                             >  5:279045/1‑149 (MQ=255)                                                                       ttGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCa                                                                                            >  5:251230/1‑133 (MQ=255)                                                                       ttGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCa                                                                                            <  6:251230/133‑1 (MQ=255)                                                                           aCCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTc                                                                        <  7:200153/149‑1 (MQ=255)                                                                             cAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCAt                                                                      <  8:98319/149‑1 (MQ=255)                                                                             cAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCAt                                                                      >  2:204016/1‑149 (MQ=255)                                                                             cAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCAt                                                                      >  2:264743/1‑149 (MQ=255)                                                                             aaGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGTCACCCAGGGCCATCTGCTCTTGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCa                                                                       <  3:347614/147‑1 (MQ=255)                                                                              aGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCCCCCACGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGAGAGGTAATCAGCAACACGCCAACGATTTTCATg                                                                     >  1:258264/1‑149 (MQ=255)                                                                              aGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATg                                                                     <  6:279045/149‑1 (MQ=255)                                                                                gACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATgg                                                                    >  7:13717/1‑148 (MQ=255)                                                                                   aTGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAAc                                                                >  3:61950/1‑149 (MQ=255)                                                                                                cgcACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACt                                                   <  8:13717/149‑1 (MQ=255)                                                                                                     acCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGctgatcattcctgccgctgcggcacagcgccacgcccgctcaccagagc                                                                                                    <  7:138775‑M1/95‑50 (MQ=255)                                                                                                     acCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGctgatcattcctgccgctgcggcacagcgccacgcccgctcaccagagc                                                                                                    >  8:138775‑M1/1‑46 (MQ=255)                                                                                                             gACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCACCACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAgcagca                                      <  4:61950/149‑1 (MQ=255)                                                                                                                   cATCAGGCTGGCAGCCAGGGGCATCTGCTCTGGTGAGGGGGCGTGGGGCTGTGCCGCAGCGGCAGGATTGATCAGCAGTGAGGTAATCAGCAACACTCCAACGATTTTCATGGCAACCGCAATTACCACTGCTATCAGCAGCATCAgcg                                <  2:258264/149‑1 (MQ=255)                                                                                                                        ggCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAg                           >  8:151070/1‑149 (MQ=255)                                                                                                                            ggCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAgcg                         >  5:84822/1‑147 (MQ=255)                                                                                                                                         aTCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAGCGCAGGCCGGCCACggg          <  7:77048/149‑1 (MQ=255)                                                                                                                                          tCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGcagagcagatggccctgggtgccagcctgatgggtgtcaccgcggtgtgcggcggcctggccatgtcctggttcaaggacacccccgccgggccct          <  1:212777‑M2/148‑97 (MQ=255)                                                                                                                                             gCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGcagagcagatggccctgggtgccagcctgatgggtgtcaccgcggt                                                            <  7:138775‑M2/95‑47 (MQ=255)                                                                                                                                             gCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGcagagcagatggccctgggtgccagcctgatgggtgtcaccgcggt                                                            >  8:138775‑M2/1‑49 (MQ=255)                                                                                                                                              ctctGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAAGACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCTATCAGCAGCATCAGCGCCAAGCGCAGGCCGGCCACGGGc         <  7:214531/145‑1 (MQ=255)                                                                                                                                              ctctGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAAcc                                                               >  5:358370/1‑91 (MQ=255)                                                                                                                                              ctctGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAAcc                                                               <  6:358370/91‑1 (MQ=255)                                                                                                                                               tctGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAGCGCAGGCCGGCCACGGGCAGGcc    >  2:289890/1‑149 (MQ=255)                                                                                                                                                 tgctgatcattcctgccgctgcggcacagcgccacgcccgctcaccagagcagatggccctgggtgccagcctgatgggtgtcaccgcggtgtgcggcggcctggccatgtcctggttcaaggacacccccgccgggccctcaatcgtg  >  6:302678‑M1/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TGGCAGGGCCAGGCTCAGCAAGAATAGCACTGCGGCGCAGACCACGATTGAGGGCCCGGCGGGGGTGTCCTTGAACCAGGACATGGCCAGGCCGCCGCACACCGCGGTGACACCCATCAGGCTGGCACCCAGGGCCATCTGCTCTGGTGAGCGGGCGTGGCGCTGTGCCGCAGCGGCAGGAATGATCAGCAGTGAGGTAATCAGCAACACGCCAACGATTTTCATGGCAACCGCAATTACCACTGCGATCAGCAGCATCAGCGCCAAGCGCAGGCCGGCCACGGGCAGGCCTT  >  NC_002947/123094‑123386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.