New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	776702 =	44 (0.780)	3 (0.060)	3/242	NT	6.0%	coding (808/966 nt)	PP_0668	transmembrane sensor
	?	NC_002947	776792 =	53 (1.000)					coding (898/966 nt)	PP_0668	transmembrane sensor

AGCCGGGCAAATGATGGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTTGGTGGGTCTCCAT  >  NC_002947/776557‑776847                                                                                                                                                  |                                                                                                                                                  gcaaagaggatgaagtagcgtcatcccaccaagcgaatgagcgtcgcaaaaccggaaaaagaattttgaaaaaacttcagaccgcctcgatggagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCATg                                                                                                                                                >  2:243351‑M1/146‑149 (MQ=255)      ggCAAATGATGGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCAc                                                                                                                                           <  2:174099/149‑1 (MQ=255)          aaTGATGGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTgg                                                                                                                                       <  4:158729/149‑1 (MQ=255)            tgatgGTGTTCGACGCGCGGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGc                                                                                                                                     <  3:248211/149‑1 (MQ=255)              atgGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCAt                                                                                                                                   <  8:239443/149‑1 (MQ=255)                  gcgtcatcccaccaagcgaatgagcgtcgcaaaaccggaaaaagaattttgaaaaaacttcagaccgcctcgatggagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCAt                                                                                                                                                 >  4:191283‑M1/129‑131 (MQ=255)                  gcgtcatcccaccaagcgaatgagcgtcgcaaaaccggaaaaagaattttgaaaaaacttcagaccgcctcgatggagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCAt                                                                                                                                                 <  3:191283‑M1/3‑1 (MQ=255)                   gtTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCAc                                                                                                                                           >  4:147530/1‑136 (MQ=255)                   gtTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCAc                                                                                                                                           <  3:147530/136‑1 (MQ=255)                             cagcaAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCa                                                                                                                            >  7:268958/1‑141 (MQ=255)                             cagcaAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCa                                                                                                                            <  8:268958/141‑1 (MQ=255)                                   gaatgagcgtcgcaaaaccggagaaagaattttgaaaaaacttcagaccgcctcgatggagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCt                                                                                                              <  3:140715‑M1/38‑1 (MQ=255)                                   gTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCt                                                                                                              >  3:49519/1‑149 (MQ=255)                                                         aaCGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCg                                                                                        >  3:333356/1‑149 (MQ=255)                                                                  gcgAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGa                                                                                >  7:195961/1‑148 (MQ=255)                                                                    gAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATac                                                                             >  2:138476/1‑149 (MQ=255)                                                                       gATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATaccga                                                                          <  8:195961/149‑1 (MQ=255)                                                                            gAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAg                                                                                                                           <  6:185137/95‑1 (MQ=255)                                                                            gAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTg                                                                     >  1:251059/1‑149 (MQ=255)                                                                              gCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCg                                                                   >  8:117700/1‑149 (MQ=255)                                                                               ccGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGt                                                                  <  4:49519/149‑1 (MQ=255)                                                                               ccGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGt                                                                  >  7:35450/1‑149 (MQ=255)                                                                                 gcgGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTg                                                                >  7:320067/1‑149 (MQ=255)                                                                                      gtgtTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCAt                                                           <  3:250283/149‑1 (MQ=255)                                                                                         ttGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCt                                                        >  6:216184/1‑149 (MQ=255)                                                                                         gatggagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGc                                                         >  2:136869‑M1/58‑148 (MQ=255)                                                                                             gagacccaccaaggcaaggtacgcacaacccggatgggcaacgcacgctcgagCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGa                                                     >  4:140715‑M1/54‑148 (MQ=255)                                                                                                       cATGCCGCTGGTTCTGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGGACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGc                                          <  1:302652/149‑1 (MQ=255)                                                                                                       cATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGc                                          >  3:186232/1‑149 (MQ=255)                                                                                                        aTGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGcc                                         >  3:165806/1‑149 (MQ=255)                                                                                                        aTGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGcc                                         >  7:231808/1‑149 (MQ=255)                                                                                                             gCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATcc                                    <  6:311498/149‑1 (MQ=255)                                                                                                             gCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATcc                                    <  1:138476/149‑1 (MQ=255)                                                                                                                 gTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTgg                                                               >  2:272100/1‑118 (MQ=255)                                                                                                                 gTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTgg                                                               <  1:272100/118‑1 (MQ=255)                                                                                                                  ttCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATa                                                                              >  8:312880/1‑102 (MQ=255)                                                                                                                  ttCAGATGATCGACATTCTGCGAGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATa                                                                              <  7:312880/102‑1 (MQ=255)                                                                                                                    cAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTtgt                             >  5:278562/1‑149 (MQ=255)                                                                                                                     aGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTtgt                             <  6:278562/148‑1 (MQ=255)                                                                                                                     aGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTtgt                             <  8:231808/148‑1 (MQ=255)                                                                                                                        tgatCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGt                         <  7:117700/149‑1 (MQ=255)                                                                                                                           tCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAg                                                    <  4:250696/119‑1 (MQ=255)                                                                                                                           tCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAg                                                    >  3:250696/1‑119 (MQ=255)                                                                                                                             gACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGTGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTAcctt                    >  5:141106/1‑149 (MQ=255)                                                                                                                             gACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTAcctt                    <  2:286381/149‑1 (MQ=255)                                                                                                                             gACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTAc                       >  2:150495/1‑146 (MQ=255)                                                                                                                             gACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTAc                       <  1:150495/146‑1 (MQ=255)                                                                                                                                      cgcgATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTtgg             <  2:251059/147‑1 (MQ=255)                                                                                                                                          aTTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTTGGTGGGtc       <  4:165806/149‑1 (MQ=255)                                                                                                                                           ttACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTTGGTGGGtct      >  4:340400/1‑149 (MQ=255)                                                                                                                                               cGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTTGGTGGGTCTCCAt  >  6:345851/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AGCCGGGCAAATGATGGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCGAGGATTGGAGCCGCGGTGTGTTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCCAGCGATTGGCAGCCTGCGTGCGGTCGGTACCTTCCCGTTGCTCGATACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGTACCTTGCCTTGGTGGGTCTCCAT  >  NC_002947/776557‑776847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.