New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1129335 =	37 (0.650)	4 (0.070)	4/248	NT	9.3%	coding (216/2856 nt)	gcvP‑I	glycine dehydrogenase
	?	NC_002947	1129374 =	42 (0.770)					coding (177/2856 nt)	gcvP‑I	glycine dehydrogenase

GCGGCCTTGGGAAATTTCTGGCTGATACGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCCAGTGCAGTGAGCATGGCCTGT  >  NC_002947/1129191‑1129482                                                                                                                                                 |                                                                                                                                                    atcgcccgtcacataggcccgcgcgccgctgacgaacaggccatgctcactgcactgggcttcgactcgctggacgccatgaccgctgcggtcatccccgacagcatcaaaggtaccagcgtgcttggctcgcacgacggccagAGc                                                                                                                                                   <  8:32290‑M1/3‑1 (MQ=255)                 gcccgcgcgccgctgacgaacaggccatgctcactgcactgggcttcgactcgctggacgccatgaccgctgcggtcatccccgacagcatcaaaggtaccagcgtgcttggctcgcacgacggccagAGCGATGGCCTTGAGCGCagc                                                                                                                                 <  4:329981‑M1/21‑1 (MQ=255)                    ggCTGATACGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCagcgag                                                                                                                              >  6:265658/1‑149 (MQ=255)                          tACGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTc                                                                                                                        >  2:309047/1‑149 (MQ=255)                           aCGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCagcgagc                                                                                                                             >  6:309106/1‑143 (MQ=255)                           aCGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCagcgagc                                                                                                                             >  6:134082/1‑143 (MQ=255)                           aCGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCagcgagc                                                                                                                             <  5:309106/143‑1 (MQ=255)                           aCGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCagcgagc                                                                                                                             <  5:134082/143‑1 (MQ=255)                              gggTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAg                                                                                                                                                    <  8:98228/117‑1 (MQ=255)                              gggTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAg                                                                                                                                                    >  7:98228/1‑117 (MQ=255)                                   aacaggccatgctcactgcactgggcttcgactcgctggacgccatgaccgctgcggtcatccccgacagcatcaaaggtaccagcgtgcttggctcgcacgacggccagAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGct                                                                                                               >  3:329981‑M1/111‑149 (MQ=255)                                         gtgtACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGcc                                                                                                         <  5:335768/149‑1 (MQ=255)                                         gtgtACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGcc                                                                                                         <  5:265658/149‑1 (MQ=255)                                           atgctcactgcactgggcttcgactcgctggacgccatgaccgctgcggtcatccccgacagcatcaaaggtaccagcgtgcttggctcgcacgacggccagAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTgg                                                                                                           <  1:43853‑M1/43‑1 (MQ=255)                                           atgctcactgcactgggcttcgactcgctggacgccatgaccgctgcggtcatccccgacagcatcaaaggtaccagcgtgcttggctcgcacgacggccagAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTgg                                                                                                           >  2:43853‑M1/103‑145 (MQ=255)                                              ccAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGc                                                                                                          >  1:164015/1‑143 (MQ=255)                                              ccAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGc                                                                                                          <  2:164015/143‑1 (MQ=255)                                              ccAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCcgtcgt                                                                                                    >  3:165480/1‑149 (MQ=255)                                                      ggTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCTATGTAGCTTTTGAACAGCTGGCTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCa                                                                                            <  3:246367/149‑1 (MQ=255)                                                        ttttCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAg                                                                                          >  7:76201/1‑149 (MQ=255)                                                                 agGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGt                                                                                 <  8:76201/149‑1 (MQ=255)                                                                   gTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTAc                                                                               >  8:57226/1‑149 (MQ=255)                                                                      gcgcAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCtt                                                                            >  6:225522/1‑149 (MQ=255)                                                                                    ccGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCgggg                                                              <  1:309047/149‑1 (MQ=255)                                                                                      ggAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGa                                                                                                >  3:319561/1‑113 (MQ=255)                                                                                      ggAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGa                                                                                                <  4:319561/113‑1 (MQ=255)                                                                                       gAGTGTGTGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTTAACAGCTGGGTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCTTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGc                                                                                     <  6:71612/123‑1 (MQ=255)                                                                                       gAGTGGGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGAGATGGCCTTGCGCGCAGCGAGAGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCAAAGCACGc                                                                                     >  5:71612/1‑123 (MQ=255)                                                                                                    gtagtaGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCa                                              >  3:231661/1‑149 (MQ=255)                                                                                                     tagtagCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCAt                                             >  2:127766/1‑149 (MQ=255)                                                                                                       gtagCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATgg                                           >  2:23513/1‑149 (MQ=255)                                                                                                        tagCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCt                                                                     <  2:333996/122‑1 (MQ=255)                                                                                                        tagCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCt                                                                     >  1:333996/1‑122 (MQ=255)                                                                                                        tagCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGc                                          >  3:295832/1‑149 (MQ=255)                                                                                                          gCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGt                                        >  7:276375/1‑149 (MQ=255)                                                                                                          gCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCCCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGt                                        >  3:199415/1‑149 (MQ=255)                                                                                                           cccTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTc                                       >  7:157519/1‑149 (MQ=255)                                                                                                                 ccGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGa                                 <  1:61128/149‑1 (MQ=255)                                                                                                                   gATGTAGCTTTTGAAGAGCTGGTTCTTGGCAGCGATGGCCTTGAGCGCAGGGAGCGCGTCGGGCTCGCTGTGGCCGTCTTGCGAGCCAAGCACGCTGGTACCTTTGATGGTGTCGGGGATGACCGGAGCGGTCATGGCGTCCAGGGAGt                               <  4:174592/149‑1 (MQ=255)                                                                                                                       tAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCCCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGaa                           <  4:199415/149‑1 (MQ=255)                                                                                                                           ttttGAACAGCTGGTTCTTGCCAGCGATCGCCTTGAGCGCAGCGAGCGCGTCGTCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCACGTACCTATGAACCTGTCGGCAATGACCGCAGCGCACAAGACCTCCAGCGAGACGAAGcc                        >  7:294540/1‑148 (MQ=255)                                                                                                                                aaCAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCcagtg                   <  5:225522/148‑1 (MQ=255)                                                                                                                                     cTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCcagtgcagt               >  3:197123/1‑147 (MQ=255)                                                                                                                                        cttCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCCAGTGCAGTGAGc           <  1:127766/147‑1 (MQ=255)                                                                                                                                             tGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCCAGTGCAGTGAGCATGGcc     >  2:283770/1‑149 (MQ=255)                                                                                                                                                cAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCCAGTGCAGTGAGCATGGCCTGt  >  6:66965/1‑149 (MQ=255)                                                                                                                                                 AGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCcagtgca                 <  4:324396‑M1/133‑1 (MQ=255)                                                                                                                                                 AGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCcagtgca                 >  3:324396‑M1/1‑133 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCGGCCTTGGGAAATTTCTGGCTGATACGGGGTGTAGGCGGTGTACCAGGCCGGGTTTTCCAGCAGGTTGCGCAGGATCGGTGCCGGAGTGTGGGTGTTGTAGTAGCCCTGGCCGATGTAGCTTTTGAACAGCTGGTTCTTGCCAGCGATGGCCTTGAGCGCAGCGAGCGCGTCGGCCTCGCTCTGGCCGTCGTGCGAGCCAAGCACGCTGGTACCTTTGATGCTGTCGGGGATGACCGCAGCGGTCATGGCGTCCAGCGAGTCGAAGCCCAGTGCAGTGAGCATGGCCTGT  >  NC_002947/1129191‑1129482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.