New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1765380 = | 54 (0.960) | 3 (0.060) | 3/244 | NT | 5.6% | coding (12/162 nt) | PP_1575 | hypothetical protein |
? | NC_002947 | 1765426 = | 50 (0.940) | coding (58/162 nt) | PP_1575 | hypothetical protein |
GACGAGCTCTGGCACGAGCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTGGAGGACGCCAAGGCTACATGGGCA > NC_002947/1765234‑1765527 | gacgaGCTCTGGCACGAGCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAg < 7:58956/147‑1 (MQ=255) gacgaGCTCGTGCCAGAGCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAgcg > 2:61227/1‑149 (MQ=255) cgaGCTCTGGCACGAGCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAGAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAgcgcg > 6:24859/1‑149 (MQ=255) gCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTgg > 5:259269/1‑149 (MQ=255) cTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGACAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGc < 5:24859/149‑1 (MQ=255) cTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCGCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGc < 5:340084/149‑1 (MQ=255) gTCCTCTCCGGCATCGGCGGGTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCAt < 7:47295/149‑1 (MQ=255) ctctCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGa < 6:259269/148‑1 (MQ=255) tctcCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATc > 1:285391/1‑149 (MQ=255) tcCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCt > 6:329652/1‑149 (MQ=255) cGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCt < 3:67944/147‑1 (MQ=255) cGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTg < 6:41162/148‑1 (MQ=255) tCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAAc < 6:264245/149‑1 (MQ=255) tCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgcgcg > 2:353993/1‑149 (MQ=255) tCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgcgcg > 3:35458/1‑149 (MQ=255) tCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgcgcg > 1:233478/1‑149 (MQ=255) gacgaTCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgcgcgc > 3:54197/1‑148 (MQ=255) acgaTCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGa < 3:191323/149‑1 (MQ=255) ccatgtagccttggcgtcctccagggagatcggcttgtcgtcctgatcgtgcggggtgaagtctgcaatggtgtacggcactggccgcttctttggatcGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGAt > 2:280626‑M1/100‑148 (MQ=255) ccatgtagccttggcgtcctccagggagatcggcttgtcgtcctgatcgtgcggggtgaagtctgcaatggtgtacggcactggccgcttctttggatcGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGAt < 1:280626‑M1/49‑1 (MQ=255) atgtagccttggcgtcctgctgtgtgagcggcttgtcgtcctgatcgtgcggggtgaagtctgcattggtgtacggcactggccgcttctttggatcGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCa > 2:333952‑M1/98‑149 (MQ=255) gcgcAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCaaa < 1:353993/149‑1 (MQ=255) cgcAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAaag < 7:205619/149‑1 (MQ=255) cAAAGCAAACCGGAGCCTGCGTGAGTTCAGGGCTCGGGACAAGTACAGGCAGCTCCGTGGCTCGCTGCAGGTCGGGCTGCGCGTGGAGCGCGCCACGGTCCTGCTGGCCATGATCCTGGCATACCAGGCGCGCGATCCAAAGAAGCGGc < 8:82001/149‑1 (MQ=255) cAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATTCGCGAGGAGCACGCCAAGGGCCTGCTGGCCATGAACATGGCAAACCAGGCCCCCGATCCAAAAAAGcac > 8:223577/1‑146 (MQ=255) cAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCa < 1:160278/95‑1 (MQ=255) cAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCa > 2:160278/1‑95 (MQ=255) aaaGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGc > 1:174946/1‑148 (MQ=255) cGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCAtt < 1:61227/147‑1 (MQ=255) tGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTg > 3:187362/1‑146 (MQ=255) ggatcgaGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGa < 1:17685/143‑1 (MQ=255) gTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGa < 4:271487/147‑1 (MQ=255) gTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGa > 3:271487/1‑147 (MQ=255) gTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACt > 3:73842/1‑149 (MQ=255) ttCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgc < 7:10425/104‑1 (MQ=255) ttCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGgc > 8:10425/1‑104 (MQ=255) aGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCAc < 4:35458/149‑1 (MQ=255) ggTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCTTGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCAcc < 4:73842/149‑1 (MQ=255) tCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCAcccc > 7:275529/1‑149 (MQ=255) ttGGGAGATGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGTTCCTGGCATACCAGGGGCGCGATCCATTGATGCGGGCAGTGCCGTGGGCCTTTGGAGACTTCAcccgg > 5:123643/1‑146 (MQ=255) ttGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCg > 1:39650/1‑148 (MQ=255) ggAGAAGTACAGGCAGCTCCGTGCCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCg < 1:301732/111‑1 (MQ=255) ggAGAAGTACAGGCAGCTCCGTGACTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCg > 2:301732/1‑111 (MQ=255) agaAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGAt < 4:187362/149‑1 (MQ=255) gaAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATc < 3:80883/149‑1 (MQ=255) aGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAg < 5:329652/149‑1 (MQ=255) aGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGgacga > 7:160118/1‑149 (MQ=255) gCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGgacgac > 5:74962/1‑148 (MQ=255) cAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCAcccc < 6:214850/131‑1 (MQ=255) cAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCAcccc > 5:214850/1‑131 (MQ=255) ccGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAg > 5:342863/1‑145 (MQ=255) ccGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAg < 6:342863/145‑1 (MQ=255) cTCGCTGCATGTCGGGATCCGCGAGGACCGCGCCACGGGCCTGCTCGCCAAGATCCTGGCAAACCAGGCGCCCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACATCACCCCGCACGATCAGGACGACAAGCCGATCTcc < 6:123643/148‑1 (MQ=255) tCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATcc < 4:211690/77‑1 (MQ=255) tCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATcc > 3:211690/1‑77 (MQ=255) tCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCt > 2:159270/1‑149 (MQ=255) gCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTgg < 6:83028/149‑1 (MQ=255) gCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTg > 7:77618/1‑148 (MQ=255) aTGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTGGAGGAc > 2:250549/1‑149 (MQ=255) gATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTGGAGGACGCCAAgg > 6:341563/1‑149 (MQ=255) GCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTGGAGGACGCCAAGGCTACATGGGCa < 7:46545‑M1/148‑1 (MQ=255) | GACGAGCTCTGGCACGAGCTCGTCCTCTCCGGCATCGGCGGCTCGACGATCGCGCAGGCCAAAGAAAACCTGAGCCTGCGTGAGTTCAGGTCTTGGGAGAAGTACAGGCAGCTCCGTGGCTCGCTGCATGTCGGGATGCGCGTGGAGCGCGCCACGGGCCTGCTGGCCATGATCCTGGCAAACCAGGCGCGCGATCCAAAGAAGCGGCCAGTGCCGTACACCATTGCAGACTTCACCCCGCACGATCAGGACGACAAGCCGATCTCCCTGGAGGACGCCAAGGCTACATGGGCA > NC_002947/1765234‑1765527 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |