New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1856923	45 (0.800)	3 (0.060)	3/242	NT	7.0%	coding (102/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1856949	38 (0.720)					coding (128/2259 nt)	PP_1661	dehydrogenase

AAGCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACGCAGTTCGCGC  >  NC_002947/1856781‑1857071                                                                                                                                               |                                                                                                                                                     taGCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACATACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGaaa                                                                                                                                                <  8:326401/148‑1 (MQ=255) aaGCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCTGGTTGa                                                                                                                                                  >  4:145420/1‑147 (MQ=255)  aGCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAg                                                                                                                                               >  1:36059/1‑149 (MQ=255)   gCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGt                                                                                                                                              >  2:121504/1‑149 (MQ=255)       ttCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTg                                                                                                                                          <  4:101100/149‑1 (MQ=255)       ttCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTg                                                                                                                                          <  3:145420/149‑1 (MQ=255)         cACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGt                                                                                                                                        >  8:94542/1‑149 (MQ=255)             ggTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTc                                                                                                                                    <  5:329580/149‑1 (MQ=255)                 tCGACGCCAAGGAAGGGCAGCAGCCATTAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGGGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGaa                                                                                                                                 <  5:10098/148‑1 (MQ=255)                   gACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTg                                                                                                                                          <  8:199766/137‑1 (MQ=255)                   gACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTg                                                                                                                                          >  7:199766/1‑137 (MQ=255)                           ggaaggGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGcccgattcgagcaccagcactttcaacccggc                                                                                                                      >  1:164102‑M1/1‑117 (MQ=255)                             aaggGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGcccgattcgagcaccagcactttcaacccggcca                                                                                                                    <  2:292442‑M1/149‑35 (MQ=255)                              aggGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGcccgattcgagcaccagcactttcaacccggccag                                                                                                                   <  2:164102‑M1/149‑36 (MQ=255)                                    gcagcCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCAcc                                                                                                             <  2:36059/149‑1 (MQ=255)                                     cagcCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGTCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGTTTGAAAGTGCTGGTGCTCGAATc                                                                                                                               <  5:178771/130‑1 (MQ=255)                                      agcCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGa                                                                                                           <  7:94542/149‑1 (MQ=255)                                          aTGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCg                                                                                                       >  5:115697/1‑149 (MQ=255)                                           tGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCg                                                                                                       >  2:319337/1‑148 (MQ=255)                                              gCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGc                                                                                                                                            <  6:284196/108‑1 (MQ=255)                                              gCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGc                                                                                                                                            >  5:284196/1‑108 (MQ=255)                                                  tggaCAAACCCAGAACATCGAAACCGCCGATGTGATCGGGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGt                                                                                                                                        <  4:96796/105‑1 (MQ=255)                                                     aCAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTg                                                                                                                                             <  2:315427/100‑1 (MQ=255)                                                     aCAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTg                                                                                                                                             >  1:315427/1‑100 (MQ=255)                                                      cAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCt                                                                                           >  1:206634/1‑149 (MQ=255)                                                         aCCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTg                                                                                          >  7:174529/1‑147 (MQ=255)                                                           ccAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAgc                                                                                      >  5:121900/1‑149 (MQ=255)                                                           ccAGAACATCGAAACCGCAGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCGGGAgc                                                                                      >  2:155923/1‑149 (MQ=255)                                                             aGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAgcgc                                                                                    <  6:115697/149‑1 (MQ=255)                                                                  aTCGATACGGCCGTTGTGTTCGTGGTGGGCGCCGGCATGGCCGGGAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTa                                                                               <  2:206634/149‑1 (MQ=255)                                                                                   gATCGTGGTGGGCGCCGGCATGGCCGACAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAgg                                                              >  8:302334/1‑149 (MQ=255)                                                                                       gtggtgGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCTGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGcc                                                          >  5:135761/1‑149 (MQ=255)                                                                                          gtggGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGccc                                                         >  8:161436/1‑147 (MQ=255)                                                                                           tggGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAg                                                      >  6:180996/1‑149 (MQ=255)                                                                                               cgcCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCTGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGc                                                  <  6:135761/149‑1 (MQ=255)                                                                                                gcCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGCGTCGcc                                                 >  6:6200/1‑149 (MQ=255)                                                                                                gcCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGcc                                                 <  7:161436/149‑1 (MQ=255)                                                                                                  cGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGt                                               <  6:121900/149‑1 (MQ=255)                                                                                                    gCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTAc                                             <  1:319337/149‑1 (MQ=255)                                                                                                         gCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCAc                                         <  8:174529/148‑1 (MQ=255)                                                                                                                        gCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCa                         <  1:121504/149‑1 (MQ=255)                                                                                                                          cTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGa                       >  4:164733/1‑149 (MQ=255)                                                                                                                             ccAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACcg                                                                          >  8:159567/1‑95 (MQ=255)                                                                                                                             ccAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACcg                                                                          <  7:159567/95‑1 (MQ=255)                                                                                                                                gTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGACCGGCCATTCCACAGAATCGCAGCGAGTACCTGGAGCGCTTCTACAACGCGGTGCTCAAGGCGCCCGAGACGc                                                  >  6:222296/1‑116 (MQ=255)                                                                                                                                 ttGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGc                >  7:78712/1‑149 (MQ=255)                                                                                                                                       cTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGcccggccaggcccaactggtaggccatgacactgccggccatgccggcgcccaccacgatcacatcggcggtttcgatgttctgggtttgtacattgctcatggctgctgccct          <  2:164102‑M2/149‑115 (MQ=255)                                                                                                                                       cTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACg            >  2:243652/1‑147 (MQ=255)                                                                                                                                       cTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACg            >  6:302543/1‑147 (MQ=255)                                                                                                                                       cTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACGCa          <  8:271155/149‑1 (MQ=255)                                                                                                                                        tGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGcccggccaggcccaactggtaggccatgacactgccggccatgccggcgcccaccacgatcacatcggcggtttcgatgttctgggtttgtacattgctcatggctgctgccctt         <  2:292442‑M2/149‑116 (MQ=255)                                                                                                                                          gCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGcccggccaggcccaactggtaggccatgacactgccggccatgccggcgcccaccacgatcacatcggcggtttcgatgttctgggtttgtacattgctcatggctgctgcccttcc       >  1:164102‑M2/1‑32 (MQ=255)                                                                                                                                               gTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACGCAGTTCgcgc  <  8:78712/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     AAGCAATTCACCGGTGTCGACGCCAAGGAAGGGCAGCAGCCATGAGCAATGTACAAACCCAGAACATCGAAACCGCCGATGTGATCGTGGTGGGCGCCGGCATGGCCGGCAGTGTCATGGCCTACCAGTTGGGCCTGGCCGGGTTGAAAGTGCTGGTGCTCGAATCGGGCCCGGCCATTCCACCGAATCGCAGCGAGTACCTGGAGCGCTTCTACACCGCGGTGCTCAAGGCGCCCGAGTCGCCGTACCCACCTGAGCAGAGCGAGCAGACCCCGGCCACGCAGTTCGCGC  >  NC_002947/1856781‑1857071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.