New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2099982	14 (0.250)	3 (0.060)	3/212	NT	17.9%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100031	16 (0.340)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

AACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCC  >  NC_002947/2099834‑2100129                                                                                                                                                       |                                                                                                                                                    aaCTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑G                                                                                                                                                     >  3:352228‑M1/1‑149 (MQ=255)      gATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTcc                                                                                                                                                 <  8:263472/148‑1 (MQ=255)      gATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCATGCCC‑GTTccc                                                                                                                                                >  6:176515/1‑149 (MQ=255)        tatCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCcac                                                                                                                                              <  4:70549/149‑1 (MQ=255)                  tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCt                                                                                                                                    >  5:127054/1‑149 (MQ=255)                    ccGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCC‑GATCCCACAGGTACAggt                                                                                                                                    >  5:317197/1‑145 (MQ=255)                        gactgTTTCCGGTTCTTTGCGTGGCCCTTGCATAGCCGAATCCCCCC‑GGCGGAGGGTGGGTGTGTCTGTTATTTTCTGTTGATCGCCCCGGGGGGGCGGTTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGccc                                                                                                                              <  6:56195/145‑1 (MQ=255)                         ccGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGcccc                                                                                                                             <  4:352228/149‑1 (MQ=255)                                 ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGaa                                                                                                                     <  5:124629/149‑1 (MQ=255)                                 ccGTTCCTTGCGCTACGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAg                                                                                                                                      <  2:319420/132‑1 (MQ=255)                                 ccGTTCCTTGCGCTACGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAg                                                                                                                                      >  1:319420/1‑132 (MQ=255)                                    ttCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCATGCCC‑GTTACCACAGGTAAAGCGTAGCCCCAGGCTGAACg                                                                                                                   >  1:235167/1‑149 (MQ=255)                                       cTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCaa                                                                                                                <  6:127054/148‑1 (MQ=255)                                        ttGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCC‑GTTCCCACAGGTACACCTTAGCCCCCGGCGGAACGCCAGc                                                                                                              >  3:288609/1‑149 (MQ=255)                                              tgcgcAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg                                                                                                        >  3:47680/1‑149 (MQ=255)                                                    aGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑Gctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacg                                                                                                  <  7:102332‑M1/149‑52 (MQ=255)                                                     gCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑Gctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgg                                                                                                 <  1:314393‑M1/149‑53 (MQ=255)                                                     gCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑Gctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgg                                                                                                 >  2:314393‑M1/1‑97 (MQ=255)                                                          gCCGATTAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTGTGTTGATCGCCTAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGGTTAGCCCCAGGCTGAAGGCAAGCCCTGTGGGAGcgggcaa                                                                                             >  2:306321‑M2/1‑141 (MQ=255)                                                          gCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaa                                                                                             >  5:184982‑M2/1‑141 (MQ=255)                                                           ccGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagc                                                                                           >  4:47680‑M2/1‑140 (MQ=255)                                                                                                          accGCCACGCGGGGCCCGGTTGGCGCCCCACCCCGGG‑TTGCCCGGTCCCCCCAGGTACCCTTCACCCCCACGCTAAACGCACCCCCTGGGGGTGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAg                                              <  3:260434/146‑1 (MQ=255)                                                                                                             gCCAAGCGGCCCCCGCTTGGCGCCCCTCCGCGGGCATTCCC‑CTTAACACAGGTAAAGCATAGCCCCCGGCGTGACGCAAACCCGGTTGGGGCGGGCAAGCCCGCGGCGGGGCGCCGAGCGGCCCCCAAAAAACGGAGAATGTTTGGAgt                                          >  8:235482/1‑149 (MQ=255)                                                                                                                                              gctgcccc‑GTCCCCACAGCTACCGCTTCCCCCCCGGCTGAACCCACGCCCTGGGGGCGGGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGa         <  2:235167/144‑1 (MQ=255)                                                                                                                                              gCTTGCCC‑Gctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcgg         >  4:47680‑M1/1‑9 (MQ=255)                                                                                                                                                ttGCCC‑Gctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggc        >  5:184982‑M1/1‑7 (MQ=255)                                                                                                                                                ttGCCC‑Gctcccacagggcttgccttcagcctggggctaacctgtacctgtgggaacgggcaagcccgcggaggggcgccaagcggcccccgctaggcgatcaacacaaatgaacagacagacccaccagcagccggggctaatcggc        >  2:306321‑M1/1‑7 (MQ=255)                                                                                                                                                    cc‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc   >  2:314393‑M2/1‑52 (MQ=255)                                                                                                                                                    cc‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc   <  1:314393‑M2/149‑98 (MQ=255)                                                                                                                                                     c‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgct  <  7:102332‑M2/149‑99 (MQ=255)                                                                                                                                                       |                                                                                                                                                    AACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCC‑GGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCC‑GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCC  >  NC_002947/2099834‑2100129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.