New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2639540 =	50 (0.880)	4 (0.070)	4/248	NT	7.7%	coding (1117/1479 nt)	PP_2310	methyl‑accepting chemotaxis transducer
	?	NC_002947	2639589 =	48 (0.880)					coding (1068/1479 nt)	PP_2310	methyl‑accepting chemotaxis transducer

CGGTGATTTCAGCCAGCGCCTCACCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCG  >  NC_002947/2639393‑2639688                                                                                                                                                    |                                                                                                                                                     cGGTGATTTCAGCCAGCGCCTCACCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGtt                                                                                                                                                     >  3:139219/1‑149 (MQ=255)             ccagcGCCTCACCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTg                                                                                                                                         >  3:24488/1‑149 (MQ=255)                    cTCACCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGt                                                                                                                                  <  1:135357/149‑1 (MQ=255)                       aCCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGc                                                                                                                                                  >  4:144653/1‑130 (MQ=255)                       aCCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGc                                                                                                                                                  <  3:144653/130‑1 (MQ=255)                               ccTGTGCCTGACGCACACAGTCGTCGGCCTTGTACCAGCTCACCTGCATGAACTCCACCGCATATCCGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGTTTTGCACGCGTTTGGCCAGGTTGCGCACTTCa                                                                                                                       >  6:247169/1‑149 (MQ=255)                                   tgCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCg                                                                                                                    <  6:7932/148‑1 (MQ=255)                                     ccTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGcc                                                                                                                 <  1:272763/149‑1 (MQ=255)                                       tGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTg                                                                                                                                         >  4:241672/1‑123 (MQ=255)                                       tGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTg                                                                                                                                         <  3:241672/123‑1 (MQ=255)                                           gCACACAGTCGTCGGCCTTGTACGAGCTATCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGTCCCACACg                                                                                                           >  4:19831/1‑149 (MQ=255)                                                  gtcgtcGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGc                                                                                                    >  4:338294/1‑149 (MQ=255)                                                   tcgtcgGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGc                                                                                                    >  6:363433/1‑148 (MQ=255)                                                      tcgGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACg                                                                                                <  4:24488/149‑1 (MQ=255)                                                          ccTTGTACGAGCTCTCCTGCATGAACTCCACCGCATAGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGcc                                                                                             >  1:59445/1‑148 (MQ=255)                                                           cTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGcc                                                                                             >  7:68643/1‑147 (MQ=255)                                                              gTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCGCTTCATCGGCCACCACGGCAAAGCCACGGCCTAg                                                                                          <  2:228908/147‑1 (MQ=255)                                                                 cGAGCTCTCCAGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGc                                                                                     >  6:19315/1‑149 (MQ=255)                                                                  gAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGcc                                                                                    >  4:122738/1‑149 (MQ=255)                                                                   aGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCg                                                                                   <  4:139219/149‑1 (MQ=255)                                                                       ctcCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGgcgc                                                                               >  8:24931/1‑149 (MQ=255)                                                                        tcCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGgcgcg                                                                              >  3:113245/1‑149 (MQ=255)                                                                           tGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGgcgcgcgc                                                                           >  4:42042/1‑149 (MQ=255)                                                                                    tCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCaaa                                                                                                      >  8:218773/1‑113 (MQ=255)                                                                                    tCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCaaa                                                                                                      <  7:218773/113‑1 (MQ=255)                                                                                    gaccaacttgctggcgcttaacgctgccatcgaagccgcgcgcgccggcgacctaggccgtggcTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATc                                                                                                                     <  6:71625‑M1/34‑1 (MQ=255)                                                                                    gaccaacttgctggcgcttaacgctgccatcgaagccgcgcgcgccggcgacctaggccgtggcTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATc                                                                                                                     >  5:71625‑M1/65‑98 (MQ=255)                                                                                      cACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATgg                                                                >  5:102817/1‑149 (MQ=255)                                                                                      cACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATg                                                                 <  3:338294/148‑1 (MQ=255)                                                                                       caacttgctggcgcttaacgctgccatcgaagccgcgcgcgccggcgacctaggccgtggcTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACgg                                                                                                          >  3:18135‑M1/62‑106 (MQ=255)                                                                                       caacttgctggcgcttaacgctgccatcgaagccgcgcgcgccggcgacctaggccgtggcTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACgg                                                                                                          <  4:18135‑M1/45‑1 (MQ=255)                                                                                        ccGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATgg                                                                >  8:91644/1‑147 (MQ=255)                                                                                         cGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAg                                                                                                     <  8:52054/109‑1 (MQ=255)                                                                                         cGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAg                                                                                                     >  7:52054/1‑109 (MQ=255)                                                                                         cGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAg                                                             >  2:55536/1‑149 (MQ=255)                                                                                                cgGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAg                                                      >  5:90560/1‑149 (MQ=255)                                                                                                 gggTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAgc                                                     <  3:122738/149‑1 (MQ=255)                                                                                                   gTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAgcgc                                                   <  2:59445/149‑1 (MQ=255)                                                                                                      cccGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCa                                                 <  5:247169/148‑1 (MQ=255)                                                                                                             gCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTg                                         <  4:113245/149‑1 (MQ=255)                                                                                                             gCAGGGCCGAAACCATGGTAGTGATCTCATCCGTGGAGGTTTGCACACATTTGGCCAGATTGCGCACTTCATCGGCCACCCCGGCAAACCCACGGCCTAGGTCGCCGGCGCCCGCGGCTACGATGGCACGGGTAAGCGCCAGCAAGtgg                                         >  8:54701/1‑147 (MQ=255)                                                                                                              cAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTg                                         <  5:363433/148‑1 (MQ=255)                                                                                                                 ggCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTTGTCt                                     <  5:19315/149‑1 (MQ=255)                                                                                                                     gAAACCATGGTGGTGATCTCCTCCGTGGAGGTTTGCCCGCGTTTGGCCAGGTTGCGCACTTCATCGGCCCCCACGGCAAAGCCACGGCCGAGGTCGCCGGCGCGCGCGGCTGCGATGGCCGCGTTACGAGCCAGCAAGTTGGTCTGTTc                                 >  7:273923/1‑149 (MQ=255)                                                                                                                     gAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTc                                 >  2:339785/1‑149 (MQ=255)                                                                                                                     gAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTc                                 <  1:339785/149‑1 (MQ=255)                                                                                                                      aaaCCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCg                                >  3:330850/1‑149 (MQ=255)                                                                                                                       aaCCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCgg                               <  6:102817/149‑1 (MQ=255)                                                                                                                          cATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCaa                            >  4:134688/1‑149 (MQ=255)                                                                                                                                 gtgATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACtgtg                     <  3:42042/149‑1 (MQ=255)                                                                                                                                 gtgATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACtgtg                     <  2:245957/149‑1 (MQ=255)                                                                                                                                  tgATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAgg                                                                                         <  3:318705/80‑1 (MQ=255)                                                                                                                                  tgATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACAACGGCAAAGCCACGGCCTAgg                                                                                         >  4:318705/1‑80 (MQ=255)                                                                                                                                   gATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCgg                               >  2:333737/1‑137 (MQ=255)                                                                                                                                   gATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCgg                               <  1:333737/137‑1 (MQ=255)                                                                                                                                       tcATCCGTGGAGGTTTGCACGCGTTTGGCGAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATca                >  1:245950/1‑148 (MQ=255)                                                                                                                                          tCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACt            >  2:218513/1‑149 (MQ=255)                                                                                                                                                    TTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCg  >  1:218513‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGGTGATTTCAGCCAGCGCCTCACCGGCTTCCTGTGCCTGACGCACACAGTCGTCGGCCTTGTACGAGCTCTCCTGCATGAACTCCACCGCATCGCGGGTGCCCGACTGCAGGGCCGAAACCATGGTGGTGATCTCATCCGTGGAGGTTTGCACGCGTTTGGCCAGGTTGCGCACTTCATCGGCCACCACGGCAAAGCCACGGCCTAGGTCGCCGGCGCGCGCGGCTTCGATGGCAGCGTTAAGCGCCAGCAAGTTGGTCTGTTCGGCAATACTGTGGATCACACTGACTACACCG  >  NC_002947/2639393‑2639688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.