New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2651703 =	43 (0.760)	4 (0.070)	4/246	NT	7.0%	coding (715/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	2651786 =	65 (1.210)					coding (632/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

CCTTGTTGGAGTTGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGAC  >  NC_002947/2651556‑2651842                                                                                                                                                    |                                                                                                                                            gccgcagtacctgcaagacctgatcagctggtcggccatcggtgcccgcaccaccgaatcgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaat                                                                                                                                             >  1:100381‑M1/148‑148 (MQ=255)   ttgttgGAGTTGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGcc                                                                                                                                          >  4:166674/1‑149 (MQ=255)   cgcagtacctgcaagacctgatcagctggtcggccatcggtgcccgcaccaccgaatcgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGcc                                                                                                                                          >  3:235807‑M1/146‑149 (MQ=255)     gttgGAGTTGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCt                                                                                                                                        >  6:299175/1‑149 (MQ=255)       gtacctgcaagacctgatcagctggtcggccatcggtgcccgcaccaccgaatcgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGcc                                                                                                                                          <  1:264682‑M1/4‑1 (MQ=255)       gtacctgcaagacctgatcagctggtcggccatcggtgcccgcaccaccgaatcgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGcc                                                                                                                                          >  2:264682‑M1/142‑145 (MQ=255)           gTTGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTtggtgg                                                                                                                                  <  4:330379/149‑1 (MQ=255)            ttGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTggtggt                                                                                                                                 <  6:345061/149‑1 (MQ=255)               gCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGa                                                                                                                               <  8:286330/148‑1 (MQ=255)                  acctgatcagctggtcggccatcggtgcccgcaccaccgaatcgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGCCCTTGGTGGTGACGAt                                                                                                                           <  1:229311‑M1/19‑1 (MQ=255)                        cAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGacac                                                                                                                     <  5:299175/149‑1 (MQ=255)                              aacATGATGTTGGCCTTGATCTTGCCCTTGGCCAGGTCCAGATCGAACAGGTAGACCCTGACCGAGTCGTAGTTCGGCTTGCAATTGCCGCCCCGCAGAACCACGTGTCCGTATGGGATGCCATTGGTGGAGAGGATCGACACgccgcc                                                                                                               >  1:325517/3‑149 (MQ=255)                                cATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTtggtg                                                                                                                                   <  3:104555/127‑1 (MQ=255)                                cATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCtt                                                                                                             >  6:76436/1‑149 (MQ=255)                                aatgatgTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTtggtg                                                                                                                                   >  4:104555/2‑127 (MQ=255)                                          gCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGAt                                                                                                   <  7:238709/149‑1 (MQ=255)                                            cTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGc                                                                                                 <  5:131439/149‑1 (MQ=255)                                            cTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGc                                                                                                 >  1:163246/1‑149 (MQ=255)                                            cTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGCGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGc                                                                                                 >  3:142021/1‑149 (MQ=255)                                             ttGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGcc                                                                                                >  3:147754/1‑149 (MQ=255)                                                 tCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCACTTGGTGGTGAAGATCGACACGCCGCCTTCCTGGTTGATGCCCAg                                                                                             >  4:249244/1‑148 (MQ=255)                                                      gccttggccAGGTCCTGTTCGCACAGGGCGCCGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGGTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCg                                                                                       <  2:293072/149‑1 (MQ=255)                                                           ggccAGGTCCTGTTCGCACAGCGCGACGCTCACCGAGTCTTAGTTCGGCTTTCCATTGCCGGCTGGGAGTTCCACGTGTGCGTTTGGGTTGCCCTTGGTGGTTACCATCGACACGCCGCCTTCCTGGTTGATTCCCAGTAAGCGGTg                                                                                    <  2:325517/147‑1 (MQ=255)                                                            gccAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCgg                                                                                 >  6:333957/1‑149 (MQ=255)                                                            cgcaaacacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCgg                                                                                 <  8:190766‑M1/61‑1 (MQ=255)                                                                ggTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTg                                                                             <  5:333957/149‑1 (MQ=255)                                                                 gTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTg                                                                             >  6:13056/1‑148 (MQ=255)                                                                            acaGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTg                                                                  >  5:122500/1‑148 (MQ=255)                                                                             caGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCa                                                                <  6:122500/149‑1 (MQ=255)                                                                                      ggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGa                                                       >  2:229311‑M1/63‑149 (MQ=255)                                                                                       cTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGAt                                                      <  2:163246/149‑1 (MQ=255)                                                                                        cctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaaTGTCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATg                                                     >  7:190766‑M1/61‑149 (MQ=255)                                                                                          aCCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATgg                                                    <  2:95615/148‑1 (MQ=255)                                                                                          aCCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATgg                                                    >  1:110551/1‑148 (MQ=255)                                                                                          aCCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGCGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATgg                                                    <  4:142021/148‑1 (MQ=255)                                                                                                      ttCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACAGACTGCAGGGCATTGATGGCAACGGTCAGgcc                                       >  8:323052/1‑149 (MQ=255)                                                                                                      ttCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCGTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGgcc                                       >  1:90213/1‑149 (MQ=255)                                                                                                         ggCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGacac                                                                        <  8:552/113‑1 (MQ=255)                                                                                                          gCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCa                                   >  8:149406/1‑149 (MQ=255)                                                                                                                cATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTa                             >  2:204080/1‑149 (MQ=255)                                                                                                                  ttGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTAcc                           >  1:223569/1‑149 (MQ=255)                                                                                                                            gcAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGaaa                 <  3:166674/149‑1 (MQ=255)                                                                                                                                  ccACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACTGTTCTTGaaa                 <  6:275573/143‑1 (MQ=255)                                                                                                                                  ccACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACGGTTCTTGaaa                 >  5:275573/1‑143 (MQ=255)                                                                                                                                   cACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCAt                                  <  4:191640/125‑1 (MQ=255)                                                                                                                                   cACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCAt                                  >  3:191640/1‑125 (MQ=255)                                                                                                                                   cACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCAccg          >  1:136275/1‑149 (MQ=255)                                                                                                                                   cACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCAccg          >  3:298609/1‑149 (MQ=255)                                                                                                                                        ggCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAg     >  1:178003/1‑149 (MQ=255)                                                                                                                                          ccGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGa   <  5:76436/149‑1 (MQ=255)                                                                                                                                           cGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGAc  <  2:110551/149‑1 (MQ=255)                                                                                                                                            gTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGa   >  4:292728/1‑147 (MQ=255)                                                                                                                                                 ggTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCAt                                  <  6:96186/111‑1 (MQ=255)                                                                                                                                                 ggTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCAt                                  >  5:96186/1‑111 (MQ=255)                                                                                                                                                 ggTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGaaa                 >  6:204024/1‑128 (MQ=255)                                                                                                                                                 ggTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGaaa                 <  5:204024/128‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            CCTTGTTGGAGTTGGCATGGCTGCAGTCGACCATGATGTTGGCCTTGATCTTGGCCTTGGCCAGGTCCTGTTCGCACAGGGCGACGCTGACCGAGTCGTAGTTCGGCTTGCCATTGCCGCCGCGCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGAC  >  NC_002947/2651556‑2651842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.