New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3440612	36 (0.640)	4 (0.070)	4/250	NT	10.4%	coding (355/510 nt)	PP_3060	tail sheath protein
	?	NC_002947	= 3440670	34 (0.620)					coding (413/510 nt)	PP_3060	tail sheath protein

GCTCAAGTTCTTCGGCCTGGCTGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCACCGACCAACTGGCCAGTCAGCGCGCCGACCTCG  >  NC_002947/3440467‑3440759                                                                                                                                                  |                                                                                                                                                    gCTCAAGTTCTTCGGCCTGGCTGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGc                                                                                                                                                   >  3:69744/1‑148 (MQ=255)     aaGTTCTTCGGCCTGGCTGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGccgactt                                                                                                                                              >  1:202797‑M1/1‑142 (MQ=255)        ttcttcGGCCTGGCTGATGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGc                                                                                                                                           >  5:299486/1‑149 (MQ=255)              ggCCTGGCTGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCt                                                                                                                                     <  1:146093/149‑1 (MQ=255)                      tGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACg                                                                                                                             >  2:169652/1‑149 (MQ=255)                          ggCAACGCCTTCATCGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCAt                                                                                                                         <  8:140928/149‑1 (MQ=255)                              aCGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGcc                                                                                                                     <  8:338178/149‑1 (MQ=255)                                      aaCGGCGTATTGCGAGGCTCGTTCATGATCCAGTAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGATCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGATGCACGGCATTg                                                                                                                       <  4:127743/139‑1 (MQ=255)                                      aaCGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGa                                                                                                                                        <  4:24820/122‑1 (MQ=255)                                      aaCGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGa                                                                                                                                        >  3:24820/1‑122 (MQ=255)                                      aaCGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTg                                                                                                                       >  3:127743/1‑139 (MQ=255)                                         ggCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACctacta                                                                                                          <  1:169652/149‑1 (MQ=255)                                           cGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACa                                                                                                        <  6:126149/149‑1 (MQ=255)                                              aTTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGc                                                                                                     >  3:109890/1‑149 (MQ=255)                                                  cGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCg                                                                                                  >  7:293658/1‑148 (MQ=255)                                                      gCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTTCTACAAGCTCGAAGTc                                                                                             >  7:143065/1‑149 (MQ=255)                                                          gTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGc                                                                                          >  6:75771‑M2/1‑147 (MQ=255)                                                                  tCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttcca                                                                                 <  2:202797‑M1/149‑69 (MQ=255)                                                                     aGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGt                                                                                  <  3:274474/145‑1 (MQ=255)                                                                     aGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGt                                                                                  >  4:274474/1‑145 (MQ=255)                                                                     aGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATc                                                                              >  8:220770/1‑149 (MQ=255)                                                                          ggCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACga                                                                         <  3:195210/149‑1 (MQ=255)                                                                            cGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccg                                                                                         <  6:107478‑M1/131‑61 (MQ=255)                                                                            cGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccg                                                                                         >  5:107478‑M1/1‑71 (MQ=255)                                                                            cGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTTCTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACgaga                                                                       <  8:143065/149‑1 (MQ=255)                                                                                aCCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGa                                                                   <  6:299486/149‑1 (MQ=255)                                                                                 cccTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGAc                                                                  >  8:28028/1‑149 (MQ=255)                                                                                  ccTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggc                                                                                       <  8:241509‑M2/127‑5 (MQ=255)                                                                                  ccTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggc                                                                                       >  7:241509‑M2/1‑123 (MQ=255)                                                                                            gtcgtcACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCAt                                                       >  5:275169/1‑149 (MQ=255)                                                                                               gtcACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGaa                                                    <  8:293658/149‑1 (MQ=255)                                                                                                  aCCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGACGGCATGAAGCg                                                 >  7:109633/1‑149 (MQ=255)                                                                                                    ccTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGT‑GGCATGAAGCgtgt                                              <  7:28028/149‑1 (MQ=255)                                                                                                        cgcgGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGtca                                            <  4:69744/148‑1 (MQ=255)                                                                                                        cgcgGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGtc                                             <  2:76322/147‑1 (MQ=255)                                                                                                           ggCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggc                                                                                       >  5:234662‑M2/1‑98 (MQ=255)                                                                                                           ggCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggc                                                                                       <  6:234662‑M2/102‑5 (MQ=255)                                                                                                                ccTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCAt                                                                               <  4:66502/105‑1 (MQ=255)                                                                                                                ccTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCAt                                                                               >  3:66502/1‑105 (MQ=255)                                                                                                                 cTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCAc                                  >  1:19399/1‑149 (MQ=255)                                                                                                                  tGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCAcc                                 >  4:28449/1‑149 (MQ=255)                                                                                                                    aaaGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCTTGTCATCAACGGCACCg                                <  4:109890/148‑1 (MQ=255)                                                                                                                               cATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCACCGACCAACTGGCCa                    <  7:220770/149‑1 (MQ=255)                                                                                                                                      gACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGtca                                            <  4:269206/118‑1 (MQ=255)                                                                                                                                      gACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGtca                                            >  3:269206/1‑118 (MQ=255)                                                                                                                                         tGGAAGGCCGGCGTCAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCACCGCCCAACTGGCCAGTCAgctcgc          >  5:77328/1‑149 (MQ=255)                                                                                                                                         tGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagggtttcgcccttctgga          <  2:202797‑M2/149‑82 (MQ=255)                                                                                                                                              ggCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCACCGACCAACTGGCCAGTCAGCGCGCCGAcc     >  1:178468/1‑149 (MQ=255)                                                                                                                                               gccgccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagg                          >  7:241509‑M1/1‑4 (MQ=255)                                                                                                                                               gccgccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagg                          <  8:241509‑M1/127‑124 (MQ=255)                                                                                                                                               gccgccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttccagtcgcccatgtccagctctttcagggtgcc                                                   <  6:234662‑M1/102‑99 (MQ=255)                                                                                                                                               gccgccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttccagtcgcccatgtccagctctttcagggtgcc                                                   >  5:234662‑M1/1‑4 (MQ=255)                                                                                                                                                 cGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagggtttcg                    <  6:107478‑M2/131‑72 (MQ=255)                                                                                                                                                 cGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGcggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagggtttcg                    >  5:107478‑M2/1‑60 (MQ=255)                                                                                                                                                  gccgacttcgagcttgtagtaggtgacggcaatgccgtgcttcagctcggccttgtcgccggccttccagtcgcccatgtccagctctttcagggtgccgcgcagggtgacgacgaccgcaagggtttcgcccttctggatcttgaac  >  6:75771‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCTCAAGTTCTTCGGCCTGGCTGACGGCAACGCCTTCAACGGCGTATTCCGAGGCTCGTTCAAGATCCAGAAGGGCGAAACCCTTGCGGTCGTCGTCACCCTGCGCGGCACCCTGAAAGAGCTGGACATGGGCGACTGGAAGGCCGGCGACAAGGCCGAGCTGAAGCACGGCATTGCCGTCACCTACTACAAGCTCGAAGTCGGCGGCGAGGTCATCTACGAGATTGACCCGGTCGGCATGAAGCGTGTCATCAACGGCACCGACCAACTGGCCAGTCAGCGCGCCGACCTCG  >  NC_002947/3440467‑3440759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.