New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 390711145 (0.800)4 (0.070) 4/246 NT 8.2% coding (1596/2175 nt) nfrB bacteriophage N4 receptor inner membrane subunit
?NC_002947 = 3907129 47 (0.870)coding (1614/2175 nt) nfrB bacteriophage N4 receptor inner membrane subunit

CGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCTGA  >  NC_002947/3906969‑3907256
                                                                                                                                              |                                                                                                                                                    
cGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGttcggc                                                                                                                                                >  2:182925‑M1/1‑143 (MQ=255)
         caccacTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGcc                                                                                                                                      <  2:323004/149‑1 (MQ=255)
             aCTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAAc                                                                                                                                  >  1:7521‑M2/1‑148 (MQ=255)
                     aGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGAc                                                                                                                        <  1:112477/149‑1 (MQ=255)
                     aGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGAc                                                                                                                        <  7:66013/149‑1 (MQ=255)
                        gcCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGttcggccagggtggccaccaactgctcact                                                                                                                        <  1:182925‑M1/149‑31 (MQ=255)
                               ggCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTggg                                                                                                              <  1:9796/149‑1 (MQ=255)
                                gCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTggg                                                                                                              >  2:307312/1‑148 (MQ=255)
                                  cAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGa                                                                                                                         <  4:145279/135‑1 (MQ=255)
                                  cAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGa                                                                                                                         >  3:145279/1‑135 (MQ=255)
                                          tGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAAc                                                                                                   >  6:226057/1‑149 (MQ=255)
                                          tGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCAGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAAc                                                                                                   >  7:67066/1‑149 (MQ=255)
                                           gATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGaa                                                                                                                                   <  1:34238/118‑1 (MQ=255)
                                           gATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGaa                                                                                                                                   >  2:34238/1‑118 (MQ=255)
                                            aTCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAAc                                                                                                   <  2:147459/147‑1 (MQ=255)
                                              cACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGt                                                                                               >  2:116505/1‑149 (MQ=255)
                                               aCCGTCGAACAGTTGCAGCAGGCCATCTCCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTtggtgg                                                                                                                                                 <  7:68257/100‑1 (MQ=255)
                                               aCCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGtt                                                                                              <  8:91638/149‑1 (MQ=255)
                                               aCCGACGAACAGTTGCAGCAGGCCATAACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCAGCGTGGCTGGCTGAACACTGAGCAGAtggtgg                                                                                                                                                 >  8:68257/1‑100 (MQ=255)
                                                ccGACGATCAGATGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTc                                                                                             <  5:146209/149‑1 (MQ=255)
                                                 cgacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTc                                                                                             >  6:118450/1‑148 (MQ=255)
                                                 cgacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTc                                                                                             >  2:358219/1‑148 (MQ=255)
                                                  gacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCaa                                                                                           <  3:110976/149‑1 (MQ=255)
                                                   acgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAg                                                                                          <  1:358219/149‑1 (MQ=255)
                                                   acgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAg                                                                                          <  5:226057/149‑1 (MQ=255)
                                                     gaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGTTCGGCCAGGGTGGCCACcaactgctcactgttca                                                                                                                  >  3:328409‑M2/1‑108 (MQ=255)
                                                     gaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGTTCGGCCAGGGTGGCCACcaactgctcactgttca                                                                                                                  <  4:328409‑M2/125‑18 (MQ=255)
                                                          gTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGcc                                                                                   >  6:33175/1‑149 (MQ=255)
                                                          gTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGcc                                                                                   >  3:275447/1‑149 (MQ=255)
                                                             gcagcaGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCg                                                                                 >  1:231505/1‑148 (MQ=255)
                                                               agcagGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCaa                                                                              >  1:153861/1‑149 (MQ=255)
                                                               agcagGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCaa                                                                              <  5:33175/149‑1 (MQ=255)
                                                                     cccccACCCGCCCGGGTCGCCGGCGCCGGCGCCGCGAGGTGCCGCTGCGTGGCCGGCCGCACAGGGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCACGCTCAGCCCGCAACTGATc                                                                        <  4:275447/145‑1 (MQ=255)
                                                                      cATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCg                                                                       >  2:291487/1‑149 (MQ=255)
                                                                      cATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCg                                                                       <  2:231505/149‑1 (MQ=255)
                                                                          aCCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCa                                                                    >  1:108897/1‑148 (MQ=255)
                                                                            caacccGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAAc                                                                 >  6:25445/4‑149 (MQ=255)
                                                                                  ggTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCcgc                                                           >  7:8573/1‑149 (MQ=255)
                                                                                         aGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCt                                                    <  8:8573/149‑1 (MQ=255)
                                                                                         aGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCt                                                    >  5:38809/1‑149 (MQ=255)
                                                                                                  ggCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCAc                                                                                                           <  2:170583/85‑1 (MQ=255)
                                                                                                  ggCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCAc                                                                                                           >  1:170583/1‑85 (MQ=255)
                                                                                                    ccGCTAGATGCTGCTGAGTGGCTGGCTGAAAAGTGAGAAGTTGGTGGCCACACTGGCCGAACAACTGGACCTGCCCTCGAAACCGAAGACCGCGTTCATGATCAGCCCGCAAATGAACCGCAAAATGCCGAGCAAGCTGGACAACCAt                                          >  8:68805/1‑148 (MQ=255)
                                                                                                             gctgctgcGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTa                                 <  6:38809/148‑1 (MQ=255)
                                                                                                                 ctgcGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGc                                                 >  3:290559/1‑128 (MQ=255)
                                                                                                                 ctgcGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGc                                                 <  4:290559/128‑1 (MQ=255)
                                                                                                                  ttcGTGGGTGGCTGAAAAGTGTTCAGTTGGTGGCCACCCTGGGCGAAAAATCTGTTACCTGCCTATGGCTCCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGc                             <  1:116505/147‑1 (MQ=255)
                                                                                                                     gTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTg                        <  2:153861/149‑1 (MQ=255)
                                                                                                                             ctgAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGa                <  2:108897/149‑1 (MQ=255)
                                                                                                                              tgAACAGTGAGCAGTTGgtggccaccctggccgaacaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttc                                          <  4:328409‑M1/125‑109 (MQ=255)
                                                                                                                              tgAACAGTGAGCAGTTGgtggccaccctggccgaacaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttc                                          >  3:328409‑M1/1‑17 (MQ=255)
                                                                                                                                  cAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGAcggcg           >  8:291064/1‑149 (MQ=255)
                                                                                                                                   aGTGAGCAGTTGGTGGCCACCCTGGCCGAAcaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttcgtcggtgatcaggcccttggccaccaggc            <  1:182925‑M2/149‑120 (MQ=255)
                                                                                                                                       aGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCAcc      <  5:118450/149‑1 (MQ=255)
                                                                                                                                         cAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCt    <  1:291487/149‑1 (MQ=255)
                                                                                                                                            ttGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGc                                                                                >  6:5125/1‑70 (MQ=255)
                                                                                                                                            ttGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGc                                                                                <  5:5125/70‑1 (MQ=255)
                                                                                                                                              gttcggccagggtggccaccaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttcgtcggtgatcaggcccttggccaccaggcgctggcccagt  >  1:7521‑M1/1‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
CGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGTGGCCACCCTGGCCGAACAACTGGACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCTGA  >  NC_002947/3906969‑3907256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.