New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3907111 | 45 (0.800) | 4 (0.070) | 4/246 | NT | 8.2% | coding (1596/2175 nt) | nfrB | bacteriophage N4 receptor inner membrane subunit |
? | NC_002947 | = 3907129 | 47 (0.870) | coding (1614/2175 nt) | nfrB | bacteriophage N4 receptor inner membrane subunit |
CGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCTGA > NC_002947/3906969‑3907256 | cGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGttcggc > 2:182925‑M1/1‑143 (MQ=255) caccacTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGcc < 2:323004/149‑1 (MQ=255) aCTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAAc > 1:7521‑M2/1‑148 (MQ=255) aGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GAc < 1:112477/149‑1 (MQ=255) aGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GAc < 7:66013/149‑1 (MQ=255) gcCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGttcggccagggtggccaccaactgctcact < 1:182925‑M1/149‑31 (MQ=255) ggCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTggg < 1:9796/149‑1 (MQ=255) gCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTggg > 2:307312/1‑148 (MQ=255) cAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑Ga < 4:145279/135‑1 (MQ=255) cAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑Ga > 3:145279/1‑135 (MQ=255) tGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAAc > 6:226057/1‑149 (MQ=255) tGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCAGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAAc > 7:67066/1‑149 (MQ=255) gATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGaa < 1:34238/118‑1 (MQ=255) gATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGaa > 2:34238/1‑118 (MQ=255) aTCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAAc < 2:147459/147‑1 (MQ=255) cACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGt > 2:116505/1‑149 (MQ=255) aCCGTCGAACAGTTGCAGCAGGCCATCTCCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTtggt‑gg < 7:68257/100‑1 (MQ=255) aCCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGtt < 8:91638/149‑1 (MQ=255) aCCGACGAACAGTTGCAGCAGGCCATAACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCAGCGTGGCTGGCTGAACACTGAGCAGAtggt‑gg > 8:68257/1‑100 (MQ=255) ccGACGATCAGATGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTc < 5:146209/149‑1 (MQ=255) cgacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTc > 6:118450/1‑148 (MQ=255) cgacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTc > 2:358219/1‑148 (MQ=255) gacgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCaa < 3:110976/149‑1 (MQ=255) acgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAg < 1:358219/149‑1 (MQ=255) acgaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAg < 5:226057/149‑1 (MQ=255) gaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGTTCGGCCAGGGTGGCC‑ACcaactgctcactgttca > 3:328409‑M2/1‑108 (MQ=255) gaACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGTTCGGCCAGGGTGGCC‑ACcaactgctcactgttca < 4:328409‑M2/125‑18 (MQ=255) gTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGcc > 6:33175/1‑149 (MQ=255) gTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGcc > 3:275447/1‑149 (MQ=255) gcagcaGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCg > 1:231505/1‑148 (MQ=255) agcagGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCaa > 1:153861/1‑149 (MQ=255) agcagGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCaa < 5:33175/149‑1 (MQ=255) cccccACCCGCCCGGGTCGCCGGCGCCGGCGCCGCGAGGTGCCGCTGCGTGGCCGGCCGCACAGGGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCACGCTCAGCCCGCAACTGATc < 4:275447/145‑1 (MQ=255) cATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCg > 2:291487/1‑149 (MQ=255) cATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCg < 2:231505/149‑1 (MQ=255) aCCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCa > 1:108897/1‑148 (MQ=255) caacccGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAAc > 6:25445/4‑149 (MQ=255) ggTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCcgc > 7:8573/1‑149 (MQ=255) aGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCt < 8:8573/149‑1 (MQ=255) aGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCt > 5:38809/1‑149 (MQ=255) ggCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCAc < 2:170583/85‑1 (MQ=255) ggCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCAc > 1:170583/1‑85 (MQ=255) ccGCTAGATGCTGCTGAGTGGCTGGCTGAAAAGTGAGAAGTTGGT‑GGCCACACTGGCCGAACAA‑CTG‑GACCTGCCCTCGAAACCGAAGACCGCGTTCATGATCAGCCCGCAAATGAACCGCAAAATGCCGAGCAAGCTGGACAACCAt > 8:68805/1‑148 (MQ=255) gctgctgcGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTa < 6:38809/148‑1 (MQ=255) ctgcGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGc > 3:290559/1‑128 (MQ=255) ctgcGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGc < 4:290559/128‑1 (MQ=255) ttcGTGGGTGGCTGAAAAGTGTTCAGTTGGT‑GGCCACCCTGGGCGAAAAATCTGTTACCTGCCTATGGCTCCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGc < 1:116505/147‑1 (MQ=255) gTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTg < 2:153861/149‑1 (MQ=255) ctgAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGa < 2:108897/149‑1 (MQ=255) tgAACAGTGAGCAGTTGgtggccaccctggccgaacaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttc < 4:328409‑M1/125‑109 (MQ=255) tgAACAGTGAGCAGTTGgtggccaccctggccgaacaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttc > 3:328409‑M1/1‑17 (MQ=255) cAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGAcggcg > 8:291064/1‑149 (MQ=255) aGTGAGCAGTTGGT‑GGCCACCCTGGCCGAAcaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttcgtcggtgatcaggcccttggccaccaggc < 1:182925‑M2/149‑120 (MQ=255) aGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCAcc < 5:118450/149‑1 (MQ=255) cAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCt < 1:291487/149‑1 (MQ=255) ttGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGc > 6:5125/1‑70 (MQ=255) ttGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGc < 5:5125/70‑1 (MQ=255) gttcggccagggtggccaccaactgctcactgttcagccagccacgcagcagcaactcgcggcccaggcgcctgcgaaccgggctggtgatggcctgctgcaactgttcgtcggtgatcaggcccttggccaccaggcgctggcccagt > 1:7521‑M1/1‑1 (MQ=255) | CGGCTCGCACACCACTGGGCCAGCGCCTGGTGGCCAAGGGCCTGATCACCGACGAACAGTTGCAGCAGGCCATCACCAGCCCGGTTCGCAGGCGCCTGGGCCGCGAGTTGCTGCTGCGTGGCTGGCTGAACAGTGAGCAGTTGGT‑GGCCACCCTGGCCGAACAA‑CTG‑GACCTGCCCTGGGCACCGCTGAACCCGTTCAAGCTCAGCCCGCAACTGATCGCCAAACTGCCGCGCAAGCTGGCCACCCATTACGGCGTATTGCCCGTGGACGAAGACGGCGGCACCCTGA > NC_002947/3906969‑3907256 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |