New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4577817 =	43 (0.760)	3 (0.060)	3/248	NT	6.4%	intergenic (+26/+83)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
	?	NC_002947	4577869 =	47 (0.860)					intergenic (+78/+31)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme

GGGCTGGTGGCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGG  >  NC_002947/4577669‑4577959                                                                                                                                                      |                                                                                                                                               gggCTGGTGGCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTaaa                                                                                                                                                <  4:60749/149‑1 (MQ=255)       gtggCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTGTTCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCg                                                                                                                                            <  1:282963/148‑1 (MQ=255)         ggCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTc                                                                                                                                         >  2:307593/1‑148 (MQ=255)                    cGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCa                                                                                                                             >  4:180709/1‑149 (MQ=255)                               gCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGggtgc                                                                                                                  <  8:251069/149‑1 (MQ=255)                                           aGCGCCGATTACAGCAGTGATGTGGATTACAATGACCTGAAAGGGTTGATTG‑GCAGCCTTGGGGTGAGGATGCGGTGTTAGGCATGACCGGCCCCTTCTAGGGTAAACACGCTACTACACGGGTCACCTACGGGTGAGTTGCCttagta                                                                                                      >  3:152943/1‑144 (MQ=255)                                               ccGATTACAGCAGTGATGTGGAGGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGaa                                                                                                  <  2:89381/149‑1 (MQ=255)                                                  aTTACAGCAGTGATGTGGATGACAATGACCGGAACGGGTGGATTG‑GCAGCCGTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACgg                                                                                               <  3:38547/149‑1 (MQ=255)                                                   ttACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACggg                                                                                              >  5:254941/1‑149 (MQ=255)                                                    cgggcagccattatcgctggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggctgtactggccctttcgcgggagACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACggg                                                                                              >  5:28995‑M1/99‑149 (MQ=255)                                                       agcagTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGtctc                                                                                          >  6:7483/1‑149 (MQ=255)                                                                  ggATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAggg                                                                               >  5:32727/1‑149 (MQ=255)                                                                     tGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGc                                                                              <  7:83157/147‑1 (MQ=255)                                                                     tGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGCGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGc                                                                              >  8:83157/1‑147 (MQ=255)                                                                         aaTGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTAc                                                                        <  1:307593/149‑1 (MQ=255)                                                                           tGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAgg                                                                                <  8:340021/139‑1 (MQ=255)                                                                           tGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAgg                                                                                >  7:340021/1‑139 (MQ=255)                                                                           tGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGCAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAg                                                                      <  5:221482/149‑1 (MQ=255)                                                                            gACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGggtgcggt                                                                                                               <  3:244770/107‑1 (MQ=255)                                                                            gACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTagatc                                                                     >  7:340151/1‑145 (MQ=255)                                                                            gACCTGAACGGGTTGATTG‑GCAGCCGTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAg                                                                           <  8:340151/143‑1 (MQ=255)                                                                              ccTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGcc                                                                    >  5:151580/1‑148 (MQ=255)                                                                                  aaCGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAAcc                                                                >  1:39027/1‑148 (MQ=255)                                                                                  aaCGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAAc                                                                 <  6:32727/147‑1 (MQ=255)                                                                                    cGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGGCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGAt                                                             <  1:270988/149‑1 (MQ=255)                                                                                          gATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGc                                                        <  2:56001/148‑1 (MQ=255)                                                                                           aTTG‑GCAGCGTGGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCgg                                                      <  8:76168/149‑1 (MQ=255)                                                                                              g‑gCAGCCTTGGGGTGCGGATGCGGTGGTAGGAAGGGCCGGCCCCTTCGCGGGTAAACCCTCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGTGTCTCCCGCGAAAGGGCCAGTACAGCCAACGGATCAGTGGGGc                                                    <  7:140229/148‑1 (MQ=255)                                                                                                gCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGt                                                                                                                               >  8:124333/1‑72 (MQ=255)                                                                                                gCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGt                                                                                                                               <  7:124333/72‑1 (MQ=255)                                                                                                gCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCt                                                   <  5:7483/148‑1 (MQ=255)                                                                                                gCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCt                                                   <  6:254941/148‑1 (MQ=255)                                                                                                    ccTTGGTGTGCGGATGCGGTTGTAGTCAGGTCCTGCACCTTCGCGGGTAAACGCGCTCCTACACGGGGCACCTCCGGGTGCGGTGCCTGCGTAGGAACGGGTATCCCGCGAAAGGGACAGTACAGCCAACCGATCAGGCGTGGTTCAt                                               <  4:152943/148‑1 (MQ=255)                                                                                                         tgaagcccgcctgatcggttggctgtactggccctttcgcgggagACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCcgc                                                                                      <  6:360995‑M1/59‑1 (MQ=255)                                                                                                         tgaagcccgcctgatcggttggctgtactggccctttcgcgggagACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCcgc                                                                                      >  5:360995‑M1/46‑104 (MQ=255)                                                                                                                gATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTc                                                 >  7:257428/1‑134 (MQ=255)                                                                                                                gATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTc                                                 <  8:257428/134‑1 (MQ=255)                                                                                                                gATGCGGTGGTAGGCAGGGCCGGCCCCTTAGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACAccccc                                  >  8:308527/1‑149 (MQ=255)                                                                                                                               aGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGtt                    >  2:240920/1‑148 (MQ=255)                                                                                                                                 ggccggccCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAAcggcgg                          >  2:236774/1‑140 (MQ=255)                                                                                                                                 ggccggccCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAAcggcgg                          <  1:236774/140‑1 (MQ=255)                                                                                                                                  gccggccCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAgg                <  6:151580/149‑1 (MQ=255)                                                                                                                                        cccTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGc          >  2:48275/1‑149 (MQ=255)                                                                                                                                         ccTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGc              <  5:101119/144‑1 (MQ=255)                                                                                                                                         ccTTCGCCGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGc              >  6:101119/1‑144 (MQ=255)                                                                                                                                          cTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGa        >  5:285642/1‑149 (MQ=255)                                                                                                                                              gcgGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATaa     <  6:285642/148‑1 (MQ=255)                                                                                                                                              gcgGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAAt    <  7:308527/149‑1 (MQ=255)                                                                                                                                                      ACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATgg  >  2:222644‑M1/1‑143 (MQ=255)                                                                                                                                                      ACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATgg  <  1:222644‑M1/143‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                               GGGCTGGTGGCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTG‑GCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGG  >  NC_002947/4577669‑4577959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.