| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4908005 | 32 (0.570) | 8 (0.140) | 6/254 | NT | 20.3% | coding (20/198 nt) | PP_4317 | hypothetical protein |
| ? | NC_002947 | = 4908082 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
AAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGG > NC_002947/4907857‑4908152 | aaGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGATGACGTTGCAGTTGCCGTTGATCTTGATCTTGAGCTAGATCTTGAACTTGATCTTGATGTTGATCTTCGCGGAATCATGAGGCAGTCCGCAGGCCTTGC > 8:140653‑M1/1‑149 (MQ=255) gCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTAGCCGTTTCCGTTGCCGTTGCAGTTGCCGTTGATCTTGATCTTGATATTGATCTTGATCTTGATCTTGATCTTAATCTTCGCGACTTCAGGAGGCAGAACGAAGGCCTTGCGGa > 8:138251/1‑149 (MQ=18) gCAAAACTGTACTGTGCTGTTGTTGCTGGTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGa < 3:308292/149‑1 (MQ=255) gCAAAACTGTACTCTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCG‑‑‑‑‑‑TTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAgg > 2:234236/1‑149 (MQ=14) cAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGACGAACGCAGGCCTTGCGGAg > 6:252784/1‑149 (MQ=255) aaaaCTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAgg > 3:284666/1‑149 (MQ=255) ctgtGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCG‑‑‑‑‑‑TTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCAt < 1:234236/148‑1 (MQ=14) gttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATg > 8:296524/1‑149 (MQ=255) gttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATg > 1:205401/1‑149 (MQ=255) ttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGc > 6:139826/1‑149 (MQ=255) gctgttgcCGTTGCCGTTGCCGTTGCCTTTGCCGTAGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACTCCGGCCTCGCtcccggcaggaccgcgccgaaggccccatcct < 2:248401‑M1/148‑33 (MQ=255) ccgttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCt > 1:172855/1‑146 (MQ=37) ccgttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCt < 2:172855/146‑1 (MQ=37) ccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCa < 7:111016/149‑1 (MQ=37) ttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGTCAGGTGACGGGCATGGATGCCCGTCAAGAGCTGAGGCCCCAGGa > 5:366750/1‑149 (MQ=255) cgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑ggg > 2:112505/1‑149 (MQ=37) cgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑ggg < 5:320145/149‑1 (MQ=37) gttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑gggg < 5:139826/149‑1 (MQ=37) ttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTAATATTAGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATTCCCGTCAAGCGCTTAGGCCCCCGGAT‑GGGGc > 1:278600/1‑149 (MQ=11) ccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCt < 7:296524/148‑1 (MQ=37) gttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGCACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCg > 8:168421/1‑149 (MQ=25) ccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGgcg < 4:284666/148‑1 (MQ=32) tcttgatcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagc > 2:189981‑M1/1‑72 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagc < 1:189981‑M1/115‑44 (MQ=255) gatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcct < 8:58512‑M1/148‑87 (MQ=255) gatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCAGGGATCCCCGGCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGcc < 5:252784/147‑1 (MQ=12) gatcttgaaattgatctttatctgCGCGACTTCAGGAGCCCCACCGCAGGCCTTGCGGCGGCAGGGGACGGCCATGGAGGCCCGTCAACCGCTTAGGCCCCAGGAT‑GGGGCCTTCGGCTCGGTCCTGCCGGGAGCGAGGCCGGa < 6:189246/144‑1 (MQ=11) atcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcac > 2:320648‑M1/1‑55 (MQ=255) atcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcac < 1:320648‑M1/124‑70 (MQ=255) atcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAg < 7:145970/148‑1 (MQ=32) atcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAg < 2:92138/148‑1 (MQ=32) atctatatcttgattttgatcttCGCGACTTCAGGCGGCCGATCGCAGGGCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCGCCAGGTT‑GGGGCCTTCGGCGCGGTCCTGGCGGGAGCGAGGCCGGAGTGAg < 7:140653/142‑1 (MQ=11) gatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGAcc > 3:196575/1‑149 (MQ=32) tatttttatcttCTCTACTTAATGAGGCCTAACGCAGTAGTTGCGTAGTCAGGTGACGGGCATTGATTCCGGTCAAGCGCTGAGGCCCCAGTAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGa < 2:209489/141‑1 (MQ=11) ttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcg > 3:313418/1‑147 (MQ=32) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGcgcagcgcag > 7:304338/1‑149 (MQ=32) ttCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGga > 3:276430/1‑149 (MQ=32) gaggCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGatgatg > 2:265684/1‑149 (MQ=32) ggCCGAACGCCGGCGTGGCGGAGGCAGGGGCCGGGCAGGGATGCCCTTCAAGCGCTGTGGCCCCTGGTG‑GGGGCCTGGGGGGGGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATgg < 4:313418/148‑1 (MQ=11) cGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgc > 7:329222/1‑149 (MQ=32) gAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg > 4:281068/1‑149 (MQ=32) gAACGCAGGCCGTGCGGTCGCAGGTGACGGGCATGGCAGCCCGTCAATCGCTGAGGCCCCAGGATGGGGGCTTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgc < 1:112505/149‑1 (MQ=11) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGt > 6:258256/1‑149 (MQ=32) ggCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaa < 2:44346‑M1/149‑142 (MQ=255) ggCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatc > 2:262519‑M1/1‑8 (MQ=255) gCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatc > 8:22435‑M1/1‑7 (MQ=255) gCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccatcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaag < 3:226614‑M1/149‑143 (MQ=255) ccTTGCtcgcggcaggtacgcgccgaaggccccatccttgggcctcagcgcttgacggtcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaaga < 5:199631‑M1/149‑144 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaaga < 1:262519‑M1/149‑144 (MQ=255) gCtcccggcaggaccgctccgaatgccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgactccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaagatc < 1:209489‑M1/147‑146 (MQ=255) gCtcccggcaggaccgcgccgaaggccccatcctggggcctcggcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagat > 2:17306‑M1/1‑2 (MQ=255) gCtcccggcaggaccgcgccgaaggccccatcctggggcctcggcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagat < 1:17306‑M1/134‑133 (MQ=255) gCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaagatc < 5:331278‑M1/147‑146 (MQ=255) ctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatcgatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaagatcaag < 7:204072‑M1/149‑149 (MQ=255) ctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaagatcaag < 4:95671‑M1/149‑149 (MQ=255) | AAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAT‑GGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGG > NC_002947/4907857‑4908152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |