Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_002947 5,555,608 +GCC 100% intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 55556080 (0.000)33 (0.600)
+GCC
29/252 NT 100% intergenic (‑84/+87) PP_4887/PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
?NC_002947 5555609 = 0 (0.000)intergenic (‑85/+86) PP_4887/PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer

CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG  >  NC_002947/5555461‑5555755
                                                                                                                                                   |                                                                                                                                                   
cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGg                                                                                                                                                    <  6:303838‑M1/149‑2 (MQ=255)
    gTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgcccc                                                                                                                                                >  5:190938‑M1/1‑144 (MQ=255)
                 aaaTTCAGGTCGGCCTGGACAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcg                                                                                                                                   <  1:44915‑M1/149‑19 (MQ=255)
                    ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgt                                                                                                                                <  7:131495‑M1/149‑22 (MQ=255)
                              ccTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaa                                                                                                                      >  2:266370‑M1/1‑118 (MQ=255)
                                   gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg                                                                                                                 <  1:249066‑M1/149‑37 (MQ=255)
                                     aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTAGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATAGCGgccccggcaatttacgcgtgtatggaacaaaccagggg                                                                                                               >  2:78085‑M1/1‑111 (MQ=255)
                                       cGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggct                                                                                                             >  8:119130‑M1/1‑109 (MQ=255)
                                             gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctat                                                                                                        <  1:266370‑M1/148‑46 (MQ=255)
                                              tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCTCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatg                                                                                                       <  3:252813‑M1/148‑47 (MQ=255)
                                                 ggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc                                                                                                      <  3:82751‑M1/146‑48 (MQ=255)
                                                 ggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc                                                                                                      >  4:82751‑M1/1‑99 (MQ=255)
                                                  gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc                                                                                                  <  7:119130‑M1/149‑52 (MQ=255)
                                                    ggACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCATTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagcccc                                                                                                <  4:234904‑M1/149‑54 (MQ=255)
                                                     gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctt                                                                                               >  1:236122‑M1/1‑95 (MQ=255)
                                                          gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc                                                                                                      >  3:213388‑M1/1‑90 (MQ=255)
                                                          gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc                                                                                                      <  4:213388‑M1/137‑48 (MQ=255)
                                                            gCAACTCCTTTTTTCATTTGTCGCCGACAGCATAGAAACACCGCTCAGGTGTGGGAGCGGCATTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggtgcttctatgcagccctttcgcga                                                                                         <  6:190938‑M1/148‑61 (MQ=255)
                                                              aaCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc                                                                                             >  8:320449‑M1/1‑86 (MQ=255)
                                                              aaCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc                                                                                             <  7:320449‑M1/142‑57 (MQ=255)
                                                                      ttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcc                                                                                <  2:236122‑M1/147‑70 (MQ=255)
                                                                                          cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttc                                                          <  3:326639‑M1/149‑92 (MQ=255)
                                                                                            tAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcag                                                        <  1:78085‑M1/149‑94 (MQ=255)
                                                                                                aaCACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggccc                                                    >  5:355520‑M1/1‑52 (MQ=255)
                                                                                                     cGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca                                                                                                     >  6:153242‑M1/1‑47 (MQ=255)
                                                                                                     cGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca                                                                                                     <  5:153242‑M1/95‑49 (MQ=255)
                                                                                                                 ggAGCGGCCTTGTGTAGCGAAAGGGCCGCATAGCGgccccggcaatttacgcgtggatgcaacaaaacaggggctgctattcagcccattcgcgacacaaggcccccaaaggaccgcgcccgcttaaggcccggcacaggcccaggcag                                   >  6:281625‑M1/1‑35 (MQ=255)
                                                                                                                        ccTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactgg                                            <  7:298368‑M1/133‑106 (MQ=255)
                                                                                                                        ccTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactgg                                            >  8:298368‑M1/1‑28 (MQ=255)
                                                                                                                             tgtCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga                       <  6:355520‑M1/149‑127 (MQ=255)
                                                                                                                                cgcgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaccctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc                    >  5:245297‑M1/1‑20 (MQ=255)
                                                                                                                                 gcgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg                   >  3:70789‑M1/1‑19 (MQ=255)
                                                                                                                                 gcgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg                   >  8:203938‑M1/1‑19 (MQ=255)
                                                                                                                                      ggggcCGCTATGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc                  >  5:160166‑M1/2‑14 (MQ=255)
                                                                                                                                        ggCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagat             >  5:301795‑M1/1‑12 (MQ=255)
                                                                                                                                                  cGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcacc  <  6:301795‑M1/149‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG  >  NC_002947/5555461‑5555755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.