New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5575127 =	52 (0.920)	5 (0.090)	5/246	NT	8.7%	coding (167/1041 nt)	motB	flagellar motor rotation protein
	?	NC_002947	5575189 =	55 (1.020)					coding (105/1041 nt)	motB	flagellar motor rotation protein

CAGCTGAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGAT  >  NC_002947/5574979‑5575275                                                                                                                                                     |                                                                                                                                                     aagcttcgccgaactggaacaagcggttcgcggtcgctgagtcatggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatga                                                                                                                                                      >  6:146173‑M1/149‑149 (MQ=255)     ttcgccgaactggaacaagcggttcgcggtcgctgagtcatggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGc                                                                                                                                                  <  1:242502‑M1/5‑1 (MQ=255)      gAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGc                                                                                                                                                  >  5:316465/1‑148 (MQ=255)       aGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGc                                                                                                                                                  <  5:159654/147‑1 (MQ=255)       aGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAA‑CCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGAt                                                                                                                                               <  4:16597/149‑1 (MQ=255)           ggggACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGAtctt                                                                                                                                            <  1:351358/149‑1 (MQ=255)               tggaacaagcggttcgcggtcgctgagtcatggagaacaatcagcccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGc                                                                                                                                        <  5:206471‑M1/15‑1 (MQ=255)                   ctgcGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCa                                                                                                                                     <  2:190882/148‑1 (MQ=255)                       gtagccTCGGTCTACACTTCCGGATTGATGGTTTTGGCCGGCGCCAGCTCCGGGGAACCCCCCATGTCGATGACATAAGGCGCGCCACTCTCGGAGAACCCATTAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGt                                                                                                                                <  4:207671/144‑1 (MQ=255)                                 tCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGa                                                                                                                       >  3:264288/1‑148 (MQ=255)                                     cACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGacaa                                                                                                                    >  7:117131/1‑147 (MQ=255)                                      aCTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTTCTCAGGCGTGGCCGTGGacaaca                                                                                                                  <  6:316465/148‑1 (MQ=255)                                       cTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGc                                                                                                                <  3:53915/149‑1 (MQ=255)                                        ttCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGc                                                                                                                >  1:195893/1‑148 (MQ=255)                                        ttCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGc                                                                                                                >  5:331463/1‑148 (MQ=255)                                                  aTGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAg                                                                                                     >  1:178512/1‑149 (MQ=255)                                                  aTGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAg                                                                                                     >  2:184356/1‑149 (MQ=255)                                                   tGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAg                                                                                                     >  6:103717/1‑148 (MQ=255)                                                     gTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGgaa                                                                                                  <  6:127687/149‑1 (MQ=255)                                                      ttttGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCa                                                                                                                                     <  5:144476/113‑1 (MQ=255)                                                      ttttGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCa                                                                                                                                     >  6:144476/1‑113 (MQ=255)                                                          gTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACg                                                                                             >  3:234087/1‑149 (MQ=255)                                                            ccatcatcgtcaagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGcc                                                                                           >  5:140771‑M1/90‑149 (MQ=255)                                                                   cATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCg                                                                                    >  3:263747/1‑149 (MQ=255)                                                                    aTCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGc                                                                                   >  4:210552/1‑149 (MQ=255)                                                                     tcaagcgcgtcaagcgctttggcggcggtcaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAacgccatcagatc                                                                                   <  1:308059‑M1/68‑5 (MQ=255)                                                                     tcaagcgcgtcaagcgctttggcggcggtcaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCcat                                                                                         >  2:308059‑M1/81‑142 (MQ=255)                                                                       aagcgcgtcaagcgctttggcggcggccaccatggtggcgcctggaaaatcgcctttgccgacttcgccacggcgatgATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGt                                                                                >  6:206471‑M1/79‑149 (MQ=255)                                                                         cGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTgg                                                                              <  8:117131/149‑1 (MQ=255)                                                                         cGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTgg                                                                              <  2:195893/149‑1 (MQ=255)                                                                              aaCCGCCCAGCTCGATGACATAAGGCGTGCCACTCTCTGATAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAg                                                                         <  4:234087/149‑1 (MQ=255)                                                                                 cccccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCg                                                                      <  4:18416/149‑1 (MQ=255)                                                                                 cccccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCg                                                                      >  2:238885/1‑149 (MQ=255)                                                                                   cccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCgg                                                                     >  3:334150/1‑148 (MQ=255)                                                                                    ccAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGc                                                                    >  1:19811/1‑148 (MQ=255)                                                                                                cATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTc                                                       <  6:331463/149‑1 (MQ=255)                                                                                                cATAAGGCGTGCCACTCTCCGAGAAACCAATAGGGTCCTGGAAGTACCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTc                                                       <  1:135293/149‑1 (MQ=255)                                                                                                 aTAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGATCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTc                                                       >  7:38031/1‑148 (MQ=255)                                                                                                  tAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGGTCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTc                                                       >  1:267439/1‑147 (MQ=255)                                                                                                      gCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGgcg                                                 >  7:190314/1‑149 (MQ=255)                                                                                                          gCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGccac                                             <  1:184356/149‑1 (MQ=255)                                                                                                                ctcGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggt                                       >  7:89412/1‑149 (MQ=255)                                                                                                                 tcGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggtg                                      >  4:99243/1‑149 (MQ=255)                                                                                                                   ggAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtggtg                                      <  2:19811/147‑1 (MQ=255)                                                                                                                      gaAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACTCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGgccgc                                 <  4:264288/149‑1 (MQ=255)                                                                                                                           cAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGgccgccgcc                             >  1:353006/1‑148 (MQ=255)                                                                                                                             aTAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCaaa                          <  3:210552/149‑1 (MQ=255)                                                                                                                                gggTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgc                        <  8:89412/148‑1 (MQ=255)                                                                                                                                 ggTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtg                                         >  1:23871/1‑130 (MQ=255)                                                                                                                                 ggTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCAtg                                         <  2:23871/130‑1 (MQ=255)                                                                                                                                  gTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTTGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCTGCAAAGGCGATTTTCCAGGCACCACCATGGTGGCCGCCGCCAAAgcgc                      <  7:286571/148‑1 (MQ=255)                                                                                                                                     cTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttga                  >  3:20585/1‑149 (MQ=255)                                                                                                                                       ggAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacg                >  6:360389/1‑149 (MQ=255)                                                                                                                                        gAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGTCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgc               >  5:279342/1‑149 (MQ=255)                                                                                                                                        gAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgc               >  5:284236/1‑149 (MQ=255)                                                                                                                                        gAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgc               <  4:263747/149‑1 (MQ=255)                                                                                                                                         aaGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgcg              >  2:136783/1‑149 (MQ=255)                                                                                                                                         aaGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgcg              >  5:263273/1‑149 (MQ=255)                                                                                                                                              gCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgctt                    >  1:320546/1‑138 (MQ=255)                                                                                                                                              gCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgctt                    <  2:320546/138‑1 (MQ=255)                                                                                                                                               ccGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAgcgcttgacgcgcttgac        >  8:238395/1‑149 (MQ=255)                                                                                                                                                 ggCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACga      >  6:190802/1‑149 (MQ=255)                                                                                                                                                   cAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACgatg    <  4:334150/149‑1 (MQ=255)                                                                                                                                                     ATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACgatgat  >  3:99243‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAGCTGAGTGGGGGACTGCTGCGTCGGCTCGGTCTTCACTTCCGGATTGATGGTTTTGTCCGGCGCCATCTCCGGGGAACCCCCCAGGTCGATGACATAAGGCGTGCCACTCTCGGAGAAACCAATAGGGTCCTGGAAGTAGCCGGCAATGGCGATCTTCTGCTCAGGCGTGGCCGTGGACAACAGCCACAGCACCAGGAAGAACGCCATCATCGCCGTGGCGAAGTCGGCAAAGGCGATTTTCCAGGCGCCACCATGGTGGCCGCCGCCAAAGCGCTTGACGCGCTTGACGATGAT  >  NC_002947/5574979‑5575275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.