New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5609523	47 (0.830)	6 (0.110)	5/246	NT	12.0%	coding (75/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase
	?	NC_002947	= 5609542	43 (0.800)					coding (56/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase

CTTTAGCAAGGCACGCACCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA  >  NC_002947/5609379‑5609670                                                                                                                                                  |                                                                                                                                                    cTTTAGCAAGGCACGCACCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTgcgcgcgc                                                                                                                                                 <  3:333342/149‑1 (MQ=255)   ttAGCAAGGCACGCACCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTgcgcgcgcg                                                                                                                                                >  3:291347/1‑148 (MQ=255)           gcacgcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAg                                                                                                                                       <  4:287622/149‑1 (MQ=255)            cacgcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGa                                                                                                                                            <  8:327401/143‑1 (MQ=255)            cacgcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGa                                                                                                                                            >  7:327401/1‑143 (MQ=255)            cacgcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAgg                                                                                                                                      <  1:81556/149‑1 (MQ=255)               gcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGgcgc                                                                                                                                   <  4:314453/149‑1 (MQ=255)               gcacCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGgcg                                                                                                                                    >  3:39498/1‑148 (MQ=255)                  ccATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAgc                                                                                                                                >  5:97390‑M2/1‑147 (MQ=255)                  ccATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAgc                                                                                                                                >  6:111050‑M2/1‑147 (MQ=255)                   cATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAgcg                                                                                                                               <  8:222227‑M2/149‑4 (MQ=255)                       ggTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAgcgcaa                                                                                                                            >  7:268156‑M2/1‑142 (MQ=255)                       ggTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAgcgcaa                                                                                                                            >  3:8462‑M2/1‑142 (MQ=255)                          gCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAg                                                                                                                        <  1:168103/149‑1 (MQ=255)                              ccGCAATGCTCTCGCTCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCgg                                                                                                                     >  8:210609/1‑148 (MQ=255)                                  aaTGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGc                                                                                                                >  3:109452/1‑149 (MQ=255)                                       tctcGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgcgcgcaa                                                                                                                            <  6:195854‑M1/132‑26 (MQ=255)                                       tctcGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgcgcgcaa                                                                                                                            >  5:195854‑M1/1‑107 (MQ=255)                                           gCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGa                                                                                                        >  1:104807/1‑148 (MQ=255)                                             ccACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAAc                                                                                                     <  5:243096/149‑1 (MQ=255)                                                   aTACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAg                                                                                               <  4:39498/149‑1 (MQ=255)                                                      ccGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGt                                                                                             <  4:291347/148‑1 (MQ=255)                                                          gtgtACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATaga                                                                                        <  2:104807/149‑1 (MQ=255)                                                          gtgtACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGACGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACACGCGCAGCGCAACCAGCGGCAGCACCACGTGAAACAGCAAGGTATaga                                                                                        >  5:259492/1‑149 (MQ=255)                                                             tACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATagaga                                                                                      <  6:132728/148‑1 (MQ=255)                                                                ccAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgcgcgcaa                                                                                                                            >  2:181702‑M1/1‑82 (MQ=255)                                                                ccAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgcgcgcaa                                                                                                                            <  1:181702‑M1/107‑26 (MQ=255)                                                                    aTACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGtt                                                                              <  4:109452/149‑1 (MQ=255)                                                                       ccaccCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCAt                                                                           >  3:173919/1‑149 (MQ=255)                                                                        caccCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATg                                                                          >  3:307785/1‑149 (MQ=255)                                                                        caccCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATg                                                                          <  3:114646/149‑1 (MQ=255)                                                                         accCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATgg                                                                         >  5:180707/1‑149 (MQ=255)                                                                          cccTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATggc                                                                        <  5:76848/149‑1 (MQ=255)                                                                           ccTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgc                                                                                                                                  <  8:59978‑M1/90‑20 (MQ=255)                                                                           ccTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCtgcgcctgtatctgcgcgc                                                                                                                                  >  7:59978‑M1/1‑71 (MQ=255)                                                                           ccTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGTGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTg                                                                                >  4:14513/1‑140 (MQ=255)                                                                           ccTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGTGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTg                                                                                <  3:14513/140‑1 (MQ=255)                                                                                      gCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCTTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTa                                                             <  3:189963/148‑1 (MQ=255)                                                                                       ccGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTAcc                                                           <  7:210609/149‑1 (MQ=255)                                                                                            aGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATc                                                      >  6:173371/1‑149 (MQ=255)                                                                                              cTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGTGGGCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATcg                                                     >  1:255482/1‑149 (MQ=255)                                                                                               ttGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCt                                                                    <  5:214131/132‑1 (MQ=255)                                                                                               ttGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCt                                                                    >  6:214131/1‑132 (MQ=255)                                                                                                  aaagcaaagcGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATcgcgcg                                                 <  4:46043/148‑1 (MQ=255)                                                                                                   aagcaaagcGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATcgcgcg                                                 >  5:35917/1‑147 (MQ=255)                                                                                                              tCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAAc                                                                                                     >  1:162104/1‑84 (MQ=255)                                                                                                              tCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAAc                                                                                                     <  2:162104/84‑1 (MQ=255)                                                                                                              tCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACt                                       <  8:53519/146‑1 (MQ=255)                                                                                                              tCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGAAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACt                                       >  7:53519/1‑146 (MQ=255)                                                                                                                gCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCaaa                                  <  7:222227/149‑1 (MQ=255)                                                                                                                      aCGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTc                            >  8:160594/1‑149 (MQ=255)                                                                                                                        gCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGGATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCgg                          >  3:347684/1‑149 (MQ=255)                                                                                                                         cTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGgc                         <  6:180707/149‑1 (MQ=255)                                                                                                                                     cGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTgc               <  2:223760/147‑1 (MQ=255)                                                                                                                                     cGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTgc               >  1:223760/1‑147 (MQ=255)                                                                                                                                            cTTGCTCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAg                                                                                               <  3:25736/61‑1 (MQ=255)                                                                                                                                            cTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAg                                                                                               >  4:25736/1‑61 (MQ=255)                                                                                                                                            cTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGc          >  8:51421/1‑146 (MQ=255)                                                                                                                                            cTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGc          <  7:51421/146‑1 (MQ=255)                                                                                                                                             ttGCGCtgcgcctgtatctgcgcgcgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgagagcattgcggccgcacc       >  3:8462‑M1/1‑6 (MQ=255)                                                                                                                                             ttGCGCtgcgcctgtatctgcgcgcgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgagagcattgcggccgcacc       >  7:268156‑M1/1‑6 (MQ=255)                                                                                                                                             ttGCGCGCGCGCAGATACAGGCGCAgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgaga                       >  5:195854‑M2/1‑25 (MQ=255)                                                                                                                                             ttGCGCGCGCGCAGATACAGGCGCAgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgaga                       <  6:195854‑M2/132‑108 (MQ=255)                                                                                                                                             ttGCGCGCGCGCAGATACAGGCGCAgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgg                                                >  2:181702‑M2/1‑25 (MQ=255)                                                                                                                                             ttGCGCGCGCGCAGATACAGGCGCAgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgg                                                <  1:181702‑M2/107‑83 (MQ=255)                                                                                                                                             ttGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCggg      >  5:371266/1‑149 (MQ=255)                                                                                                                                                cgctgcgcctgtatctgcgcgcgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgagagcattgcggccgcacccatg   <  8:222227‑M1/149‑147 (MQ=255)                                                                                                                                                 gctgcgcctgtatctgcgcgcgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgagagcattgcggccgcacccatgg  >  5:97390‑M1/1‑2 (MQ=255)                                                                                                                                                 gctgcgcctgtatctgcgcgcgcgcaaggcaccggcctacggccagcgtatcggcgagcgctttgctttcaagctgccggccatgcgccagggtggtatctgggtacacgcggtatcggtgggcgagagcattgcggccgcacccatgg  >  6:111050‑M1/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTTTAGCAAGGCACGCACCATGGGTGCGGCCGCAATGCTCTCGCCCACCGATACCGCGTGTACCCAGATACCACCCTGGCGCATGGCCGGCAGCTTGAAAGCAAAGCGCTCGCCGATACGCTGGCCGTAGGCCGGT‑GCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA  >  NC_002947/5609379‑5609670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.