Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_002947 5,681,415 +CGGG 100% intergenic (‑133/+71) PP_4986 ← / ← PP_4987 hemolysin III family channel protein/putative Chemotaxis protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 56814150 (0.000)21 (0.380)
+CGGG
21/250 NT 100% intergenic (‑133/+71) PP_4986/PP_4987 hemolysin III family channel protein/putative Chemotaxis protein
?NC_002947 5681416 = 0 (0.000)intergenic (‑134/+70) PP_4986/PP_4987 hemolysin III family channel protein/putative Chemotaxis protein

ACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCA  >  NC_002947/5681271‑5681559
                                                                                                                                                |                                                                                                                                                
aCCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcgg                                                                                                                                               <  6:133175‑M1/148‑4 (MQ=255)
            gCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcag                                                                                                                                  >  7:258603‑M1/1‑133 (MQ=255)
              aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCCGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagcc                                                                                                                                >  2:17328‑M1/1‑131 (MQ=255)
              aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagcc                                                                                                                                <  5:321003‑M1/149‑19 (MQ=255)
              aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcgggg                                                                                                                                             <  6:47336‑M1/136‑6 (MQ=255)
              aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcgggg                                                                                                                                             >  5:47336‑M1/1‑131 (MQ=255)
                     gACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgc                                                                                                                         <  8:258603‑M1/149‑26 (MQ=255)
                        ctcgtGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgac                                                                                                                      <  5:121605‑M1/149‑29 (MQ=255)
                                   ggCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCCCTGCATGAACCGCcggggctgctgcgcagccctatcgcgccacaaggcggcg                                                                                                           >  8:169675‑M1/1‑110 (MQ=255)
                                              tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccaga                                                                                                >  7:81687‑M1/1‑99 (MQ=255)
                                                     aTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccag                                                                                         >  5:362832‑M1/1‑92 (MQ=255)
                                                        cTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgccgccctatcgcggcacaaggccgctcccactccagaccaccaggcc                                                                                      >  1:95340‑M1/1‑89 (MQ=255)
                                                              gCTTCGTGCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTCCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgc                                                                                <  7:169675‑M1/149‑67 (MQ=255)
                                                                              gAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgccgcccaatcgcgccacaaggccgctcccactccagaccaccccgccctgccccgcacatcctaacc                                                                  >  8:108164‑M1/1‑67 (MQ=255)
                                                                                           tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttg                                                      >  1:32168‑M1/1‑54 (MQ=255)
                                                                                             gctaaagggGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATTAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagat                                                 <  1:101639‑M1/146‑98 (MQ=255)
                                                                                                     ggCGCGTAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACGGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtca                                         <  7:108164‑M1/149‑106 (MQ=255)
                                                                                                       cgcgAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacg                                       <  6:362832‑M1/149‑108 (MQ=255)
                                                                                                            accggCCCCAGGCTTTAATTGCCCCTCCAAGAACCCCcggggctgctgcgcagccctatcccgacaaaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcacca                                  <  7:56057‑M1/147‑113 (MQ=255)
                                                                                                              cGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagc                                <  8:81687‑M1/149‑115 (MQ=255)
                                                                                                                    cAGGCTTTCATTGCCACTGCATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttcc                          <  2:32168‑M1/149‑121 (MQ=255)
                                                                                                                      ggattccattgcaACTGCATGACCCGCcggggctgctgcgcagccctatcgccacacacggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaa                        <  3:253055‑M1/143‑123 (MQ=255)
                                                                                                                             aTTGCCACTGCATGAACCGCcggggctgctgcgcagccctagcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgacc                 <  2:95340‑M1/149‑130 (MQ=255)
                                                                                                                                       cATGAACCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcttcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccgg         <  1:17328‑M1/147‑138 (MQ=255)
                                                                                                                                            aCCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccggtacccgc  >  2:71474‑M1/1‑5 (MQ=255)
                                                                                                                                                ccggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgc                                             <  6:80865‑M1/102‑102 (MQ=255)
                                                                                                                                                ccggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgc                                             >  5:80865‑M1/1‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                
ACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCGCGCCA  >  NC_002947/5681271‑5681559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.