New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 91421241 (0.730)4 (0.070) 4/246 NT 8.8% coding (923/1743 nt) fruA PTS fructose transporter subunit IIBC
?NC_002947 = 914238 44 (0.820)coding (949/1743 nt) fruA PTS fructose transporter subunit IIBC

TCGAGGCCTACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGCCGATCCTTATCATT  >  NC_002947/914095‑914384
                                                                                                                                                  |                                                                                                                                                  
tCGAGGCCTACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGGTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGAtcggc                                                                                                                                               <  8:259899‑M2/149‑6 (MQ=255)
tCGAGGCCTACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGAtcggc                                                                                                                                               <  1:251256‑M2/149‑6 (MQ=255)
   aGGCCTACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCggcggc                                                                                                                                            <  6:367649/149‑1 (MQ=255)
     gCCTACAAAGAGGCGGGCACCTTGTCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCt                                                                                                                                          >  8:242365/1‑149 (MQ=255)
        tACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGtt                                                                                                                                       >  8:338426/1‑149 (MQ=255)
          cAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTgg                                                                                                                                     >  2:83776/1‑149 (MQ=255)
           aaaGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTCGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGc                                                                                                                                    >  6:246630/1‑149 (MQ=255)
                 gCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGATCATGCCCGGGGCCAGCCCGGGGCGGtcggcgatagaccaggcga                                                                                                                                 <  8:184361‑M2/146‑20 (MQ=255)
                 gCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGATCATGCCCGGGGCCAGCCCGGGGCGGtcggcgatagaccaggcga                                                                                                                                 >  7:184361‑M2/1‑127 (MQ=255)
                            gCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGtt                                                                                                                                       >  1:147086/1‑129 (MQ=255)
                            gCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGtt                                                                                                                                       <  2:147086/129‑1 (MQ=255)
                                  ggcgTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCt                                                                                                                                          >  6:349136/1‑120 (MQ=255)
                                  ggcgTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCa                                                                                                             >  7:123338/1‑149 (MQ=255)
                                         aTGGAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGGTCCGCTACTGGCAGGCTATATCGCCTTGTCTATCGCCGACC‑‑GCCCCGGGGTGGCCCCGGGCATTGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGt                                                                                                        <  1:80057/148‑1 (MQ=255)
                                         aTGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTCTCGCCGACC‑‑GCCCCGGGCGGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTg                                                                                                       <  8:61999/148‑1 (MQ=255)
                                         aTGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTg                                                                                                       <  7:338426/148‑1 (MQ=255)
                                              gATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTg                                                                                                 <  8:123338/149‑1 (MQ=255)
                                                   gCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGcc                                                                                            >  6:34227/1‑149 (MQ=255)
                                                                      aCTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTg                                                                                                                                         >  2:68474/1‑85 (MQ=255)
                                                                      aCTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTa                                                                           >  7:119870/1‑147 (MQ=255)
                                                                       cTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTTGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAg                                                                        <  5:246630/149‑1 (MQ=255)
                                                                        tGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTg                                                                                                                                         <  1:330864/83‑1 (MQ=255)
                                                                        tGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTg                                                                                                                                         >  2:330864/1‑83 (MQ=255)
                                                                          aTGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAgc                                                                       <  3:187989/147‑1 (MQ=255)
                                                                                  gCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGc                                                                                                                                    <  1:261232/78‑1 (MQ=255)
                                                                                  gCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGc                                                                                                                                    >  2:261232/1‑78 (MQ=255)
                                                                                  gCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCa                                                             >  5:192638/1‑149 (MQ=255)
                                                                                   cTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAgg                                                                >  3:170124/1‑145 (MQ=255)
                                                                                   cTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAgg                                                                <  4:170124/145‑1 (MQ=255)
                                                                                         gCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGccc                                                       >  5:203802/1‑148 (MQ=255)
                                                                                           aGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGAt                                                    >  3:211680/1‑149 (MQ=255)
                                                                                            ggCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATg                                                   <  3:199488/149‑1 (MQ=255)
                                                                                              cTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCa                                                                                                             >  7:245648/1‑89 (MQ=255)
                                                                                              cTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCa                                                                                                             <  8:245648/89‑1 (MQ=255)
                                                                                                 tatCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGgc                                                <  5:34227/147‑1 (MQ=255)
                                                                                                     gCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGCTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCtt                                          <  7:259899/149‑1 (MQ=255)
                                                                                                         ggTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGACAGCACCTTGGGGGCCGGCTTCATCGGTTGCATTGTCGCCCGTTTCCTCGCCGGTTACATCGCCAAGGCCATTTCACGATGGGCGCGCTTGcc                                       >  6:31114/1‑148 (MQ=255)
                                                                                                          gTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGAtcggcgatagaccaggcgatatagcctgccagtagcggaaccatcagtttgaaggcagcctcaccgccaatctgcatcaacgccgccggcaaggtgcccgcctctttgtag                                     <  4:37643‑M2/149‑112 (MQ=255)
                                                                                                            cTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCcag                                    >  3:288740/1‑148 (MQ=255)
                                                                                                             tATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGTCATGATCGTCGGCCTGTTGGCCAGAACCTTGTGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCAAAGGCCATTGCCCGATGGTCGACATTGCCcag                                    >  8:151927/1‑147 (MQ=255)
                                                                                                                 gCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGAtcggcgatagaccaggcgatatagcctgccagtagcggaaccatcagtttgaaggcagcctcaccgccaatctgcatcaacgccgccggcaaggtgcccgcctctttgtaggcctcga                              >  3:37643‑M2/1‑31 (MQ=255)
                                                                                                                 gCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTCTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCt                              <  5:313220/149‑1 (MQ=255)
                                                                                                                    gACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGa                           <  1:83776/149‑1 (MQ=255)
                                                                                                                     aCC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAg                          <  8:147836/149‑1 (MQ=255)
                                                                                                                     aCC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAACACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAg                          <  2:251256/149‑1 (MQ=255)
                                                                                                                       catgCCCGGGGCCAGCCCGGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAg                          >  8:268051/4‑149 (MQ=255)
                                                                                                                       c‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGgc                        >  3:203206/1‑149 (MQ=255)
                                                                                                                          gCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGgcg                       <  7:242365/149‑1 (MQ=255)
                                                                                                                           ccccGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCGGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTg                                         >  5:307716/1‑130 (MQ=255)
                                                                                                                           ccccGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTg                                         <  6:307716/130‑1 (MQ=255)
                                                                                                                           ccccGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGgcgc                      <  6:203802/149‑1 (MQ=255)
                                                                                                                           ccccGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTACCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGAt                                                    <  7:197025/119‑1 (MQ=255)
                                                                                                                           ccccGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTACCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGAt                                                    >  8:197025/1‑119 (MQ=255)
                                                                                                                                 gCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGc                <  6:192638/149‑1 (MQ=255)
                                                                                                                                      ccccGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGCCGATc           >  6:198655/1‑149 (MQ=255)
                                                                                                                                      ccccGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGCCGATc           <  8:119367/149‑1 (MQ=255)
                                                                                                                                                tGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGCCGATCCTTATCAtt  >  4:342867/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
TCGAGGCCTACAAAGAGGCGGGCACCTTGCCGGCGGCGTTGATGCAGATTGGCGGTGAGGCTGCCTTCAAACTGATGGTTCCGCTACTGGCAGGCTATATCGCCTGGTCTATCGCCGACC‑‑GCCCCGGGCTGGCCCCGGGCATGATCGGCGGCCTGTTGGCCAGCACCTTGGGGGCCGGCTTCATCGGTGGCATTGTCGCCGGTTTCCTCGCCGGTTACAGCGCCAAGGCCATTGCCCGATGGGCGCGCTTGCCCAGCAGCCTGGAGGCGCTCAAGCCGATCCTTATCATT  >  NC_002947/914095‑914384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.