New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1035592	45 (0.800)	4 (0.070)	4/248	NT	8.2%	coding (429/588 nt)	PP_0893	ThiJ/PfpI family protein
	?	NC_002947	= 1035617	46 (0.850)					coding (454/588 nt)	PP_0893	ThiJ/PfpI family protein

AAAGGTGTTGGACCTGGTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGGCTTGA  >  NC_002947/1035469‑1035760                                                                                                                                                     |                                                                                                                                                     aaaGGTGTTGGACCTGGTGCGGGCGTTCGACCAGGCCGGCAATCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTgg                                                                                                                                                      >  5:252844/1‑149 (MQ=255)     gtgtTGGACCTGGTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGcggg                                                                                                                                                  >  4:261088‑M2/1‑145 (MQ=255)           gACCTGGTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCa                                                                                                                                          <  7:285059/148‑1 (MQ=255)            aCCTGGTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACg                                                                                                                                        >  5:27928/1‑149 (MQ=255)                 gTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTc                                                                                                                                     <  1:352690/147‑1 (MQ=255)                     gtgCGTTCGCCCAGGCCTGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGAc                                                                                                                               <  6:252844/147‑1 (MQ=255)                     gggCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGAc                                                                                                                               <  1:342385/149‑1 (MQ=255)                              aCCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCGGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTg                                                                                                                      <  1:333836/149‑1 (MQ=255)                               ccAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTg                                                                                                                      >  5:81087/1‑148 (MQ=255)                                     cGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAgg                                                                                                             >  6:167796/1‑149 (MQ=255)                                       gCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGgcg                                                                                                           <  7:167030/149‑1 (MQ=255)                                         aaGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GTCCAGGCGCa                                                                                                         >  4:69408/1‑149 (MQ=255)                                            ccGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCAtgt                                                                                                      <  3:217116/149‑1 (MQ=255)                                                  gcggcgGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATg                                                                                                 <  6:102224/148‑1 (MQ=255)                                                   cggcggTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATgg                                                                                                <  6:81087/148‑1 (MQ=255)                                                    ggcggTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCa                                                                                              <  2:353774/149‑1 (MQ=255)                                                        gtgtGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGCAGTGTAGGGCACTTTAAAGGACAACGCGGTG‑‑GAACAGGCCCATTTGGTTGGCaa                                                                                             >  1:296637/1‑149 (MQ=255)                                                             ccATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGa                                                                                     >  8:273945/1‑149 (MQ=255)                                                              cATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGAc                                                                                    <  7:273945/149‑1 (MQ=255)                                                                      ccAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCgg                                                                            >  7:296802/1‑149 (MQ=255)                                                                            gctgGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCAc                                                                               <  4:158884/140‑1 (MQ=255)                                                                            gctgGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCAc                                                                               >  3:158884/1‑140 (MQ=255)                                                                             ctgGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCGCGTTCATCGACATCGCGGTG‑‑GACCAGGCGCCTGTGGATGGCACGCTGGTGACCGCACCGGCATGGcc                                                                     >  4:295922/1‑149 (MQ=255)                                                                               ggcggcggcAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTg                                                                                         >  7:106436/1‑127 (MQ=255)                                                                               ggcggcggcAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTg                                                                                         <  8:106436/127‑1 (MQ=255)                                                                                   gcggcAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCa                                                               >  5:179466/1‑149 (MQ=255)                                                                                                        cGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGtt                                          >  3:214541/1‑149 (MQ=255)                                                                                                        cGTGAGTGCAGCGCGGACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGGTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGtt                                          <  3:295922/149‑1 (MQ=255)                                                                                                           gAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCt                                       >  5:345756/1‑149 (MQ=255)                                                                                                               gCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTa                                     >  3:248001/1‑147 (MQ=255)                                                                                                               gCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTa                                     >  3:270856/1‑147 (MQ=255)                                                                                                               gCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTa                                     <  4:248001/147‑1 (MQ=255)                                                                                                                cAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTaaa                                   <  6:179466/148‑1 (MQ=255)                                                                                                                 aGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTcc                                        <  5:169694/142‑1 (MQ=255)                                                                                                                 aGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTcc                                        >  6:169694/1‑142 (MQ=255)                                                                                                                    gcgTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCt                              >  6:207422/1‑149 (MQ=255)                                                                                                                    gcgTACCCGGCATGTGCACCAGAAGTGCGCCTGGcgggtacgcgctgcactcacgcccctccagcacccctgccgccgccagcagctgggcaccatggcacaccgccgcaatcggcttgccggcctggtcgaacgcccgcaccaggtc                                    >  5:78557‑M2/1‑34 (MQ=255)                                                                                                                    gcgTACCCGGCATGTGCACCAGAAGTGCGCCTGGcgggtacgcgctgcactcacgcccctccagcacccctgccgccgccagcagctgggcaccatggcacaccgccgcaatcggcttgccggcctggtcgaacgcccgcaccaggtc                                    <  6:78557‑M2/148‑115 (MQ=255)                                                                                                                      gTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTgg                            <  5:167796/149‑1 (MQ=255)                                                                                                                      gTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTgg                            <  4:270856/149‑1 (MQ=255)                                                                                                                        aCCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTggg                           >  5:181580/1‑148 (MQ=255)                                                                                                                          ccGGCATGTGCGCCAGAAGTGCGCCTGGcgggtacgcgctgcactcacgcccctccagcacccctgccgccgccagcagctgggcaccatggcacaccgccgcaatcggcttgccggcctggtc                                                      >  4:191211‑M2/1‑28 (MQ=255)                                                                                                                          ccGGCATGTGCGCCAGAAGTGCGCCTGGcgggtacgcgctgcactcacgcccctccagcacccctgccgccgccagcagctgggcaccatggcacaccgccgcaatcggcttgccggcctggtc                                                      <  3:191211‑M2/124‑97 (MQ=255)                                                                                                                          ccGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTGGAGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGc                          >  1:102949/1‑149 (MQ=255)                                                                                                                            ggCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTTGCGGCGTTCCTTAAAGTGCTGGGCAcgc                      >  6:14346/1‑149 (MQ=255)                                                                                                                            ggCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCAcgc                      <  8:296802/149‑1 (MQ=255)                                                                                                                               aTGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTa                   <  4:214541/149‑1 (MQ=255)                                                                                                                                     gcCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCt             <  5:207422/149‑1 (MQ=255)                                                                                                                                     gcCAGAAGTGCGCCTGGA‑GCGT‑‑GCCACGTTCATAGACATCGCGGTG‑‑GACCAGGCGCATGTCGATGGCAACCTGGTGACCGCACCGGCATGCCCCGCGCCCCCGCCCTGGCTGGCGGCGTTCCTTAAAGTCCTGGGCACGCGAATTGACt             >  6:264932/1‑149 (MQ=255)                                                                                                                                      ccAGAAGTGCGGCTGGC‑GGGT‑‑GGCACGTTCATCGACCTCGCGGTG‑‑GACCACGCGCATGTGGATCGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTg            <  2:296637/149‑1 (MQ=255)                                                                                                                                      ccAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GCCCCGGCGCATGTGGATGGCACCCTGGTGCCCGCACCGGCATGGCCCGCGACCCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTAGTGTCTg            >  2:5630/1‑149 (MQ=255)                                                                                                                                       cAGAAGGGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGa           <  5:264932/149‑1 (MQ=255)                                                                                                                                                gcCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGGCttga  <  2:102949/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAAGGTGTTGGACCTGGTGCGGGCGTTCGACCAGGCCGGCAAGCCGATTGCGGCGGTGTGCCATGGTGCCCAGCTGCTGGCGGCGGCAGGGGTGCTGGAGGGGCGTGAGTGCAGCGCGTACCCGGCATGTGCGCCAGAAGTGCGCCTGGC‑GGGT‑‑GGCACGTTCATCGACATCGCGGTG‑‑GACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGGCTTGA  >  NC_002947/1035469‑1035760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.