New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1562830	54 (0.960)	3 (0.060)	3/238	NT	6.0%	coding (572/1476 nt)	PP_1372	hypothetical protein
	?	NC_002947	= 1562865	45 (0.860)					coding (607/1476 nt)	PP_1372	hypothetical protein

CTCAAAGACCTCAAGGCCCTGCTGGCGCATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCTGTTGTGGCTGCTGGCCGAACTGTTC  >  NC_002947/1562718‑1563011                                                                                                                                                    |                                                                                                                                                   cTCAAAGACCTCAAGGCCCTGCTGGCGCATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGg                                                                                                                                                   <  1:106615‑M2/149‑2 (MQ=255) cTCAAAGACCTCAAGGCCCTGCTGGCGCATCTGAAGGACAACCCGCACCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGATCGg                                                                                                                                                   <  4:62252‑M2/149‑2 (MQ=255)             aaGGCCCTGCTGGCGCATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCAtt                                                                                                                                       <  3:208927/149‑1 (MQ=255)               ggCCCTGCTGGCGCATCTGCACCACAACCCGCAGCTGCTCGGCGAAGACAGCTCGCTGAGGACCACGGCCTCCACCCAGGCTTTGTGGCGCCGGCTCGCTACCTTGGCGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGc                                                                                                                                     <  4:74627/149‑1 (MQ=255)                   ctgctgGCGCATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACt                                                                                                                                 >  3:171532/1‑149 (MQ=255)                         gcgcATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTggagga                                                                                                                           <  1:270512/149‑1 (MQ=255)                         gcgcATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTggagg                                                                                                                            <  4:121056/148‑1 (MQ=255)                                 gAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCtgctgc                                                                                                                   >  6:169388/1‑149 (MQ=255)                                 gAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCtgctgc                                                                                                                   >  5:264640/1‑149 (MQ=255)                                       cAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCt                                                                                                              >  5:271435/1‑148 (MQ=255)                                        aaCCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGa                                                                                                            >  8:84366/1‑149 (MQ=255)                                           ccGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGAcc                                                                                                                         <  5:29026/133‑1 (MQ=255)                                           ccGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGAcc                                                                                                                         >  6:29026/1‑133 (MQ=255)                                              cAGCTGCTCGGCGAAGACAGCGCGCTGATGCCCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGa                                                                                                      <  6:118179/149‑1 (MQ=255)                                                    ctCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGAtggacg                                                                                                >  5:315859/1‑149 (MQ=255)                                                     tCGGTGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGACACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGAt                                                                                                     >  6:359982/1‑143 (MQ=255)                                                     tCGGTGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGACACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGAt                                                                                                     <  5:359982/143‑1 (MQ=255)                                                     tCGGCGAAGTCAGGGCGCTGATGTCCACGGCCTCCTCCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGTCGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGAtggacgt                                                                                               <  5:304214/149‑1 (MQ=255)                                                       ggCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGAtggacgtgg                                                                                             <  7:84366/149‑1 (MQ=255)                                                        gCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGcc                                                                                                                <  8:269062/129‑1 (MQ=255)                                                        gCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGcc                                                                                                                >  7:269062/1‑129 (MQ=255)                                                             gACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTAt                                                                                       >  5:91229/1‑149 (MQ=255)                                                                          tgaCCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGAt                                                                          >  4:210981/1‑149 (MQ=255)                                                                            aCCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATg                                                                         <  6:315859/148‑1 (MQ=255)                                                                            aCCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGc                                                                        <  2:106615/149‑1 (MQ=255)                                                                              cACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCa                                                                      <  5:169388/149‑1 (MQ=255)                                                                                      ccACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTg                                                              >  2:165456/1‑149 (MQ=255)                                                                                       cACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGAtt                                                               <  4:171532/147‑1 (MQ=255)                                                                                        aCCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGt                                                            <  3:62252/149‑1 (MQ=255)                                                                                          ccAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTg                                                           >  2:319884/1‑148 (MQ=255)                                                                                             ggCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACg                                                       <  3:210981/149‑1 (MQ=255)                                                                                              gcgttgttgCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGa                                                      <  2:107738/146‑1 (MQ=255)                                                                                              gCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCAc                                                        >  6:181561/1‑147 (MQ=255)                                                                                                tttGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGa                                                      >  8:37722/1‑147 (MQ=255)                                                                                                tttGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGa                                                      <  7:37722/147‑1 (MQ=255)                                                                                                  tgttgCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAgg                                                    <  6:91229/147‑1 (MQ=255)                                                                                                        gcCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAg                                            <  1:319884/149‑1 (MQ=255)                                                                                                         ccGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGgcgagccggcgcaacaaagcctgggtggaggccgtggtcatcagcgcgctgtcttcgccgagcagctgcgggttgtccttcagatgcgccagcagggccttgagg                                           <  5:85275‑M2/149‑106 (MQ=255)                                                                                                         ccGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCATCTGGAGGACCTGCTGCGCCCTGATCCGGAt                                                                                                     <  5:72584/91‑1 (MQ=255)                                                                                                         ccGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCATCTGGAGGACCTGCTGCGCCCTGATCCGGAt                                                                                                     >  6:72584/1‑91 (MQ=255)                                                                                                            gCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGgcgagccggcgcaacaaagcctgggtggaggccgtggtcatcagcgcgctgtcttcgccgagcagctgcgggttgtccttcagatgcgccagcagggccttgaggtct                                        <  3:325888‑M2/149‑109 (MQ=255)                                                                                                                gCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGgcgagccggcgcaacaaagcctgggtggaggccgtggtcatcagcgcgctgtcttcgccgagcagctgcgggttgtccttcagatgcgccagcagggccttgaggtctttga                                    >  4:325888‑M2/1‑37 (MQ=255)                                                                                                                gCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGTCAGCCGATTGGTGCACGAGGCACCCAAGGTGTAcgc                                    >  2:38498/1‑149 (MQ=255)                                                                                                                     cTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTCCAACTTGAGGACCTGCTGCGACCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCAAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGt                               >  5:149124/1‑149 (MQ=255)                                                                                                                      ttGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGtt                              >  7:235450/1‑149 (MQ=255)                                                                                                                        ggAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTTGTGCACGAGGCACCCAAGGTGTACGCGACGTTc                             <  6:271435/148‑1 (MQ=255)                                                                                                                        ggAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTc                             <  7:180362/148‑1 (MQ=255)                                                                                                                         gAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCt                           <  1:165456/149‑1 (MQ=255)                                                                                                                           gcagcaGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCtgt                         >  5:35588/1‑149 (MQ=255)                                                                                                                              gcagGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGTACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGTCACCCAAGGTGTACGCGACGTTCCtgttgt                      <  6:264640/149‑1 (MQ=255)                                                                                                                              gcagGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCtgttgt                      <  5:181561/149‑1 (MQ=255)                                                                                                                                             aCTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCTGTTGTGGCTGCTGGCCGAAc       >  8:131735/1‑149 (MQ=255)                                                                                                                                                   cGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGTCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGATGTTCCTGTTGTGGCTGCTGGCCGAACTGTTc  <  1:38498/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CTCAAAGACCTCAAGGCCCTGCTGGCGCATCTGAAGGACAACCCGCAGCTGCTCGGCGAAGACAGCGCGCTGATGACCACGGCCTCCACCCAGGCTTTGTTGCGCCGGCTCGCTACCTTGGAGCAGCAGGGCGCCGAGGCACTGTTCGGCGAGCCGGCATTGCAACTGGAGGACCTGCTGCGCCCTGATCCGGATGGACGTGGACGTATCCACCTGCTCGATGCCAGCCGATTGGTGCACGAGGCACCCAAGGTGTACGCGACGTTCCTGTTGTGGCTGCTGGCCGAACTGTTC  >  NC_002947/1562718‑1563011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.